Ah, scale x100 (not -0.1 to 0.5 but -10 to 50). I'm embarrassed I didn't notice this earlier, All solved and works beautifully, thank you very very much!
2017-02-17 18:21 GMT+01:00 Douglas N Greve <gr...@nmr.mgh.harvard.edu>: > When you click on the different areas, is the value displayed in the > control window correct? > > > On 02/17/2017 09:55 AM, Johannes Klene wrote: > > Dear dr. Greve, > > thank you, this looks exactly like what I need. I have created the mgh > > file as suggested in the matlab script, with my stats values > > (correlations, ranging from -0.1 to ~0.5) as 'annotvals'. After > > updating to FS6.0 i also managed to get the tksurferfv command to run > > (tksurferfv fsaverage lh inflated -aparc -ov vals.mgh -fminmax .01 > > 1). However, the viewer only shows a uniformly yellow inflated > > surface (lh.inflated loaded); I think I actually see the correct map > > for a very brief moment while the viewer is loading. I've tried > > playing around with the settings but nothing appears to work. Could > > you help me one more time, with pointing towards the right settings > > for the viewer in my situation? > > Thank you very much. Kind regards, Johannes > > > > 2017-02-16 20:07 GMT+01:00 Douglas N Greve <gr...@nmr.mgh.harvard.edu > > <mailto:gr...@nmr.mgh.harvard.edu>>: > > > > Try annotval2surfoverlay.m (it is in v6; if you using another > > version, I > > can get you the file) > > > > > > On 02/15/2017 05:43 AM, Johannes Klene wrote: > > > Hi! > > > I've been reading up on tkviewer etc. but can't figure out how to > > > accomplish the following: > > > I calculated some stats (outside Freesurfer) summarizing the > > relation > > > between cortical thickness and my outcome measure, per region > > present > > > in the Killiany/Desikan atlas (i.e. running analyses on data > > obtained > > > from aparcstats2table). Now I'd like to visualize these results, > one > > > number per region, by projecting them on the standard brain such > > that > > > regions that showed a stronger association are more yellow and > > regions > > > with weaker association are more red. Is there a straightforward > way > > > of doing this? I was thinking of maybe adjusting the RGB values in > > > FreeSurferColorLUT.txt file? > > > I'd be very grateful if anyone can provide some tips how to handle > > > this. Kind regards, Johannes > > > > > > > > > _______________________________________________ > > > Freesurfer mailing list > > > Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > > > -- > > Douglas N. Greve, Ph.D. > > MGH-NMR Center > > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > > Phone Number: 617-724-2358 <tel:617-724-2358> > > Fax: 617-726-7422 <tel:617-726-7422> > > > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > > <https://gate.nmr.mgh.harvard.edu/filedrop2> > > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > Outgoing: > > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu <mailto:freesur...@nmr.mgh. > harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > > > > > The information in this e-mail is intended only for the person to > > whom it is > > addressed. If you believe this e-mail was sent to you in error and > > the e-mail > > contains patient information, please contact the Partners > > Compliance HelpLine at > > http://www.partners.org/complianceline > > <http://www.partners.org/complianceline> . If the e-mail was sent > > to you in error > > but does not contain patient information, please contact the > > sender and properly > > dispose of the e-mail. > > > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >
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