Hello FreeSurfer Developers,
We are attempting to install Freesurfer 5.3 on a server. We have an odd
problem. When we run any FS command from this server we get a license
error: Invalid FreeSurfer license key found in license file
/opt/Ngs_analysis/programs/freesurfer/5.3/freesurfer/.license
But when the same freesurfer called from another server we can run
freesurfer without problems.
So we think that maybe is an error from the eviroment.
The server where FS is installed is suse 2011 and the server where run FS
instructions and works is centos 2017. I don't know if it helps.
Also we have a problem apptempting to install Freesurfer 6.0 on that sever
we allways get a license error wherever we call it.
I've searche the list and no similar errors have been reported. Does anyone
have any thought on ho to trouble-shoot this one? Also, I've attached the
recon-all.log and enviroment infromation.
1)FreeSurfer version:
freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0, we don't find any
other version. We have freesurfer runing in other machine with suse
also freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 but in
version file is write
freesurfer-x86_64-redhat-linux-gnu-stable5-20130513 either in the
version file of our server is write
freesurfer-x86_64-unknown-linux-gnu-stable5-20130513. In the website
I just see for dowloading centos version and in the email list says
that is not tested but people says that no have problems.
2)Platform: SUSE LINUX
Release: 11
Codename: n/a
3)uname -a: Linux BioNGS1 3.0.101-0.7.17-default #1 SMP Tue Feb 4
13:24:49 UTC 2014 (90aac76) x86_64 x86_64 x86_64 GNU/Linux
4)recon-all.log, enviroment: see attached
thanks in advance,
anna
LESSKEY=/etc/lesskey.bin
NNTPSERVER=news
MANPATH=/usr/local/man:/usr/local/share/man:/usr/share/man:/usr/man
HOSTNAME=BioNGS1
FS_OVERRIDE=0
XKEYSYMDB=/usr/share/X11/XKeysymDB
HOST=BioNGS1
SHELL=/bin/bash
TERM=xterm
PROFILEREAD=true
HISTSIZE=1000
PERL5LIB=/opt/Ngs_analysis/programs/freesurfer/5.3/freesurfer/mni/lib/perl5/5.8.5
MORE=-sl
OS=Linux
LOCAL_DIR=/opt/Ngs_analysis/programs/freesurfer/5.3/freesurfer/local
JRE_HOME=/usr//jvm/jre
USER=ernest
LS_COLORS=no=00:fi=00:di=01;34:ln=00;36:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=41;33;01:ex=00;32:*.cmd=00;32:*.exe=01;32:*.com=01;32:*.bat=01;32:*.btm=01;32:*.dll=01;32:*.tar=00;31:*.tbz=00;31:*.tgz=00;31:*.rpm=00;31:*.deb=00;31:*.arj=00;31:*.taz=00;31:*.lzh=00;31:*.lzma=00;31:*.zip=00;31:*.zoo=00;31:*.z=00;31:*.Z=00;31:*.gz=00;31:*.bz2=00;31:*.tb2=00;31:*.tz2=00;31:*.tbz2=00;31:*.xz=00;31:*.avi=01;35:*.bmp=01;35:*.fli=01;35:*.gif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mng=01;35:*.mov=01;35:*.mpg=01;35:*.pcx=01;35:*.pbm=01;35:*.pgm=01;35:*.png=01;35:*.ppm=01;35:*.tga=01;35:*.tif=01;35:*.xbm=01;35:*.xpm=01;35:*.dl=01;35:*.gl=01;35:*.wmv=01;35:*.aiff=00;32:*.au=00;32:*.mid=00;32:*.mp3=00;32:*.ogg=00;32:*.voc=00;32:*.wav=00;32:
FSFAST_HOME=/opt/Ngs_analysis/programs/freesurfer/5.3/freesurfer/fsfast
MNI_PERL5LIB=/opt/Ngs_analysis/programs/freesurfer/5.3/freesurfer/mni/lib/perl5/5.8.5
XNLSPATH=/usr/share/X11/nls
FMRI_ANALYSIS_DIR=/opt/Ngs_analysis/programs/freesurfer/5.3/freesurfer/fsfast
ENV=/etc/bash.bashrc
HOSTTYPE=x86_64
FSF_OUTPUT_FORMAT=nii.gz
FROM_HEADER=
MINC_BIN_DIR=/opt/Ngs_analysis/programs/freesurfer/5.3/freesurfer/mni/bin
PAGER=less
CSHEDIT=emacs
SUBJECTS_DIR=/opt/Ngs_analysis/ernest/prova
XDG_CONFIG_DIRS=/etc/xdg
MINICOM=-c on
MAIL=/var/spool/mail/ernest
PATH=/opt/Ngs_analysis/programs/freesurfer/5.3/freesurfer/bin:/opt/Ngs_analysis/programs/freesurfer/5.3/freesurfer/fsfast/bin:/opt/Ngs_analysis/programs/freesurfer/5.3/freesurfer/tktools:/opt/Ngs_analysis/programs/freesurfer/5.3/freesurfer/mni/bin:/opt/Ngs_analysis/programs/freesurfer/5.3/freesurfer/bin:/opt/Ngs_analysis/programs/freesurfer/5.3/freesurfer/fsfast/bin:/opt/Ngs_analysis/programs/freesurfer/5.3/freesurfer/tktools:/opt/Ngs_analysis/programs/freesurfer/5.3/freesurfer/mni/bin:/usr/NX/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin
CPU=x86_64
NXDIR=/usr/NX
JAVA_BINDIR=/usr/lib64/jvm/java/bin
INPUTRC=/etc/inputrc
PWD=/opt/Ngs_analysis/ernest/prova
FUNCTIONALS_DIR=/opt/Ngs_analysis/programs/freesurfer/5.3/freesurfer/sessions
JAVA_HOME=/usr/lib64/jvm/java
LANG=es_ES.UTF-8
PYTHONSTARTUP=/etc/pythonstart
SDK_HOME=/usr/lib64/jvm/java
MINC_LIB_DIR=/opt/Ngs_analysis/programs/freesurfer/5.3/freesurfer/mni/lib
QT_SYSTEM_DIR=/usr/share/desktop-data
JDK_HOME=/usr/lib64/jvm/java
SHLVL=1
HOME=/opt/Ngs_analysis/ernest
MNI_DIR=/opt/Ngs_analysis/programs/freesurfer/5.3/freesurfer/mni
LESS_ADVANCED_PREPROCESSOR=no
OSTYPE=linux
FREESURFER_HOME=/opt/Ngs_analysis/programs/freesurfer/5.3/freesurfer
LS_OPTIONS=-N --color=tty -T 0
XCURSOR_THEME=DMZ
WINDOWMANAGER=/usr/bin/gnome
G_FILENAME_ENCODING=@locale,UTF-8,ISO-8859-15,CP1252
LESS=-M -I
MACHTYPE=x86_64-suse-linux
LOGNAME=ernest
CVS_RSH=ssh
XDG_DATA_DIRS=/usr/share
FIX_VERTEX_AREA=
LESSOPEN=lessopen.sh %s
MNI_DATAPATH=/opt/Ngs_analysis/programs/freesurfer/5.3/freesurfer/mni/data
LESSCLOSE=lessclose.sh %s %s
G_BROKEN_FILENAMES=1
JAVA_ROOT=/usr/lib64/jvm/java
COLORTERM=1
mc=() { . /usr/share/mc/bin/mc-wrapper.sh
}
_=/usr/bin/printenv
OLDPWD=/opt/Ngs_analysis/ernest
mar feb 28 11:31:52 CET 2017
/opt/Ngs_analysis/acalvo/AN_retest/prova_53/AN002_3D
/opt/Ngs_analysis/programs/freesurfer/5.3/freesurfer/bin/recon-all
-s AN002_3D -i AN002_3D.nii.gz -all
subjid AN002_3D
setenv SUBJECTS_DIR /opt/Ngs_analysis/acalvo/AN_retest/prova_53
FREESURFER_HOME /opt/Ngs_analysis/programs/freesurfer/5.3/freesurfer
Actual FREESURFER_HOME /opt/Ngs_analysis/programs/freesurfer/5.3/freesurfer
build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0
Linux BioNGS1 3.0.101-0.7.17-default #1 SMP Tue Feb 4 13:24:49 UTC 2014 (90aac76) x86_64 x86_64 x86_64 GNU/Linux
cputime unlimited
filesize unlimited
datasize unlimited
stacksize 8192 kbytes
coredumpsize 0 kbytes
memoryuse 168592908 kbytes
vmemoryuse 172097440 kbytes
descriptors 1024
memorylocked 64 kbytes
maxproc 1549471
total used free shared buffers cached
Mem: 198344548 197343180 1001368 0 782632 193730452
-/+ buffers/cache: 2830096 195514452
Swap: 16777212 964 16776248
########################################
program versions used
$Id: recon-all,v 1.379.2.73 2013/05/12 23:15:37 nicks Exp $
$Id: mri_motion_correct.fsl,v 1.14 2011/03/02 20:16:39 nicks Exp $
mri_convert -all-info
ProgramName: mri_convert ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:31:53-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
FLIRT version 5.5
$Id: talairach_avi,v 1.9 2011/03/02 18:38:06 nicks Exp $
mri_convert --version
stable5
ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:31:53-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
Program nu_correct, built from:
Package MNI N3, version 1.10, compiled by nicks@minerva (x86_64-unknown-linux-gnu) on 2010-02-20 at 17:32:37
ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:31:54-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:31:54-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_normalize.c,v 1.73.2.1 2012/10/17 19:11:32 nicks Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:31:54-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_watershed.cpp,v 1.96.2.1 2011/11/08 22:18:44 nicks Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:31:54-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:31:54-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_segment.c,v 1.40 2011/03/02 00:04:24 nicks Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mri_label2label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:31:55-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_label2label.c,v 1.40.2.2 2013/04/02 16:26:15 greve Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
======= NUMBER OF OPENMP THREADS = 1 =======
ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:31:55-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_em_register.c,v 1.84.2.3 2013/02/09 00:49:26 nicks Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:31:55-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_ca_normalize.c,v 1.52.2.2 2012/10/17 19:11:32 nicks Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:31:55-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_ca_register.c,v 1.78.2.3 2013/02/09 00:42:20 nicks Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:31:56-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_ca_label.c,v 1.96.2.1 2012/08/28 22:11:20 nicks Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:31:56-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_pretess.c,v 1.20 2011/03/02 00:04:23 nicks Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:31:56-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_fill.c,v 1.118 2011/03/16 21:23:49 nicks Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:31:56-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mri_concatenate_lta ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:31:56-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_concatenate_lta.c,v 1.10 2011/03/16 21:23:48 nicks Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:31:57-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:31:57-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_smooth.c,v 1.28 2011/03/02 00:04:34 nicks Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:31:57-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_inflate.c,v 1.43 2011/03/02 00:04:32 nicks Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:31:57-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:31:58-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:31:58-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:31:58-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:31:58-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:31:58-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_euler_number.c,v 1.8.2.2 2013/01/14 22:40:07 greve Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:31:59-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:31:59-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:31:59-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_volmask.cpp,v 1.25 2011/03/02 00:04:34 nicks Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:31:59-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_anatomical_stats.c,v 1.72 2011/03/02 00:04:26 nicks Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:32:00-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mrisp_paint.c,v 1.11 2011/03/02 00:04:35 nicks Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:32:00-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_curvature_stats.c,v 1.64 2011/03/02 00:04:30 nicks Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:32:00-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mris_calc.c,v 1.37.2.8 2013/01/28 17:05:17 greve Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
$Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $
ProgramName: mri_robust_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:32:00-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
$Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $
ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:32:01-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:32:01-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:32:01-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_or.c,v 1.3 2011/03/02 00:04:13 nicks Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:32:01-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2017/02/28-10:32:01-GMT BuildTimeStamp: May 13 2013 16:24:28 CVS: $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ User: acalvo Machine: BioNGS1 Platform: Linux PlatformVersion: 3.0.101-0.7.17-default CompilerName: GCC CompilerVersion: 40400
#######################################
GCADIR /opt/Ngs_analysis/programs/freesurfer/5.3/freesurfer/average
GCA RB_all_2008-03-26.gca
GCASkull RB_all_withskull_2008-03-26.gca
AvgCurvTif average.curvature.filled.buckner40.tif
GCSDIR /opt/Ngs_analysis/programs/freesurfer/5.3/freesurfer/average
GCS curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs
#######################################
/opt/Ngs_analysis/acalvo/AN_retest/prova_53/AN002_3D
mri_convert /opt/Ngs_analysis/acalvo/AN_retest/prova_53/AN002_3D.nii.gz /opt/Ngs_analysis/acalvo/AN_retest/prova_53/AN002_3D/mri/orig/001.mgz
mri_convert /opt/Ngs_analysis/acalvo/AN_retest/prova_53/AN002_3D.nii.gz /opt/Ngs_analysis/acalvo/AN_retest/prova_53/AN002_3D/mri/orig/001.mgz
--------------------------------------------------------------------------
ERROR: Invalid FreeSurfer license key found in license file /opt/Ngs_analysis/programs/freesurfer/5.3/freesurfer/.license
If you are outside the NMR-Martinos Center,
go to http://surfer.nmr.mgh.harvard.edu to
get a valid license file (it's free).
If you are inside the NMR-Martinos Center,
make sure to source the standard environment.
--------------------------------------------------------------------------
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from /opt/Ngs_analysis/acalvo/AN_retest/prova_53/AN002_3D.nii.gz...
Linux BioNGS1 3.0.101-0.7.17-default #1 SMP Tue Feb 4 13:24:49 UTC 2014 (90aac76) x86_64 x86_64 x86_64 GNU/Linux
recon-all -s AN002_3D exited with ERRORS at mar feb 28 11:32:02 CET 2017
To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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