Hello Daniela, Ive been looking into this error, and although I am unable to replicate it on my Mac, I do have what might be a potential solution. Could you please source freesurfer, then run the following command.
$> sudo -E fs_update Then retry the subject with the parallel flag. Please let me know how it goes if you end up trying again. Thanks. -Zeke > I second the problem found in this thread: > > http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg51917.html > > I recently downloaded FreeSurfer v. 6 on a macOS 10.12. To work around the > System Integrity Protection issue, I installed my freesurfer folder in a > local "Documents" folder instead of in Applications and that seemed to > allow me to keep System Integrity Protection enabled while running > FreeSurfer commands. > > Last night I ran recon-all on the same subject simultaneously, one using > the -parallel tag and the other without it. This morning I see that only > the one with the -parallel tag exited with errors and it seems to be this > same "lazy symbol" error (see attached for recon-all error log). > > dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address > Referenced from: > /Users/Ajay/Documents/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib > Expected in: /usr/lib/libSystem.B.dylib > > I can try running with System Integrity Protection off to see if that will > make the -parallel tag work... any other thoughts? > > > Thanks, > Daniela > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
