Hello, It looks like something is wrong with the nifti file. When you used the dcm2nii converter, are you sure your folder had all the DICOMs in place? Because the resulting nifti looks like it might have been converted with some DICOMs missing. The "co" stands for "cropped orthogonal", but it shouldn't have the result of cropping out the brain like the nifti you attached.
Best, Daniela On Sat, Mar 11, 2017 at 8:06 PM, shi yao wang <wangshiyao2...@gmail.com> wrote: > Dear FS experts: > I am using MRICron software to convert DICOM to NII. > However, one 3D MRI DICOM will generate three nii files: > Such as xxxx.nii, coXXX.nii, oXXX.nii > > When I use MRIcron to preview these files, some files show entire 3D MRI, > but others only show some parts of images. (See attached sample). > > I am wondering which files should be loaded into FS analysis. > > thanks > Lawrence > Emory University. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
