Hi all,
my colleague Vincent wanted to register a volume in MNI305 to MNI152,
unfortunately the final image appears flipped up-down and
anterior-posterior when using the --mni152reg flag with mri_vol2vol. For
example, trying to resample fsaverage orig.mgz to MNI152 using
mri_vol2vol --mov $SUBJECTS_DIR/fsaverage/mri/orig.mgz --mni152reg --o
fsaverage.orig.MNI152.nii.gz
ends up yielding the attached image (red is the output file and
background is FSL MNI152 template). Anything obvious he's doing wrong?
Cheers,
Melanie
--
Melanie Ganz-Benjaminsen, MSc, Ph.D.
Neurobiology Research Unit
University of Copenhagen
Rigshospitalet
Rockefeller Center
Juliane Maries Vej 28/30, 3.
DK-2100 Copenhagen
Denmark
phone: +45 3545 6718
e-mail: melanie.g...@nru.dk
web: http://melanie.clausundmelanie.de/
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