I added --surf mytemplate lh to the command and now it works. Thank you so much!!
----- Ursprüngliche Mail ----- Von: "Douglas N Greve" <gr...@nmr.mgh.harvard.edu> An: freesurfer@nmr.mgh.harvard.edu Gesendet: Dienstag, 11. April 2017 20:13:21 Betreff: Re: [Freesurfer] glmfit mismatch between X and C with same no of columns oh, I think I see the problem now. The input is surface-based data, but you did not include a --surf subject hemi option, so it thinks that it is a volume. On 04/11/2017 12:58 PM, Clara Kühn wrote: > Hi Doug, > > attached you find the rmanova directory after I ran the mri_glmfit command. I > hope this can shed some light on the problem... > > Cheers > Clara > > ----- Ursprüngliche Mail ----- > Von: "Douglas N Greve" <gr...@nmr.mgh.harvard.edu> > An: freesurfer@nmr.mgh.harvard.edu > Gesendet: Dienstag, 11. April 2017 18:29:52 > Betreff: Re: [Freesurfer] glmfit mismatch between X and C with same no of > columns > > Still a bit of a mystery. Can you tar up and send me the rmanova folder? > > > On 04/11/2017 11:18 AM, Clara Kühn wrote: >> Oh, yes, sorry: >> command line: >> mri_glmfit --glmdir >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2/qdec/rmanova/ --y >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//81kids_template/GLMprep/40kids-lh.thickness-rmanova.sm10.mgh >> --fsgd >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//qdec/rmanova/2017.03.27-40kids-rmanova.fsgd >> doss --C >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//qdec/rmanova/C-pre-vs-post.mtx >> >> output: >> gdfReadHeader: reading >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//qdec/rmanova/2017.03.27-40kids-rmanova.fsgd >> INFO: DeMeanFlag keyword not found, DeMeaning will NOT be done. >> Continuous Variable Means (all subjects) >> 0 pre-vs-post 0 1 >> Class Means of each Continuous Variable >> 1 Subject1 0.0000 >> 2 Subject2 0.0000 >> 3 Subject3 0.0000 >> 4 Subject4 0.0000 >> 5 Subject5 0.0000 >> 6 Subject6 0.0000 >> 7 Subject7 0.0000 >> 8 Subject8 0.0000 >> 9 Subject9 0.0000 >> 10 Subject10 0.0000 >> 11 Subject11 0.0000 >> 12 Subject12 0.0000 >> 13 Subject13 0.0000 >> 14 Subject14 0.0000 >> 15 Subject15 0.0000 >> 16 Subject16 0.0000 >> 17 Subject17 0.0000 >> 18 Subject18 0.0000 >> 19 Subject19 0.0000 >> 20 Subject20 0.0000 >> 21 Subject21 0.0000 >> 22 Subject22 0.0000 >> 23 Subject23 0.0000 >> 24 Subject24 0.0000 >> 25 Subject25 0.0000 >> 26 Subject26 0.0000 >> 27 Subject27 0.0000 >> 28 Subject28 0.0000 >> 29 Subject29 0.0000 >> 30 Subject30 0.0000 >> 31 Subject31 0.0000 >> 32 Subject32 0.0000 >> 33 Subject33 0.0000 >> 34 Subject34 0.0000 >> 35 Subject35 0.0000 >> 36 Subject36 0.0000 >> 37 Subject37 0.0000 >> 38 Subject38 0.0000 >> 39 Subject39 0.0000 >> 40 Subject40 0.0000 >> INFO: gd2mtx_method is doss >> >> $Id: mri_glmfit.c,v 1.196.2.8 2012/11/01 18:51:41 greve Exp $ >> cwd >> /data/p_npsy001_neurotrain/new_syntax_training/Pilot2-NachtestungPilot0/logfiles >> cmdline mri_glmfit --glmdir >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2/qdec/rmanova/ --y >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//81kids_template/GLMprep/40kids-lh.thickness-rmanova.sm10.mgh >> --fsgd >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//qdec/rmanova/2017.03.27-40kids-rmanova.fsgd >> doss --C >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//qdec/rmanova/C-pre-vs-post.mtx >> sysname Linux >> hostname etsch >> machine x86_64 >> user ckuehn >> FixVertexAreaFlag = 1 >> UseMaskWithSmoothing 1 >> OneSampleGroupMean 0 >> y >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2/81kids_template/GLMprep/40kids-lh.thickness-rmanova.sm10.mgh >> logyflag 0 >> usedti 0 >> FSGD >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//qdec/rmanova/2017.03.27-40kids-rmanova.fsgd >> glmdir /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2/qdec/rmanova/ >> IllCondOK 0 >> ReScaleX 1 >> DoFFx 0 >> Creating output directory >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2/qdec/rmanova/ >> Loading y from >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2/81kids_template/GLMprep/40kids-lh.thickness-rmanova.sm10.mgh >> INFO: gd2mtx_method is doss >> Saving design matrix to >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2/qdec/rmanova//Xg.dat >> Normalized matrix condition is 1 >> Matrix condition is 40 >> Pruning voxels by thr: 0.000000 >> Found 97361 voxels in mask >> Saving mask to >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2/qdec/rmanova//mask.mgh >> search space = 97361.000000 >> DOF = 39 >> Starting fit and test >> Fit completed in 0.551233 minutes >> Computing spatial AR1 in volume. >> fMRIspatialAR1(): hit 0 voxels >> WARNING: no voxels in AR1 computation >> Residual: ar1mn = (-nan,-nan,-nan) fwhm = (-nan,-nan,-nan) -nan >> Writing results >> C-pre-vs-post >> maxvox sig=3.9739 F=18.6032 at index 4623 0 0 seed=1492398301 >> mri_glmfit done >> >> >> Cheers, Clara >> >> >> >> ----- Ursprüngliche Mail ----- >> Von: "Douglas Greve" <gr...@nmr.mgh.harvard.edu> >> An: freesurfer@nmr.mgh.harvard.edu >> Gesendet: Dienstag, 11. April 2017 15:58:27 >> Betreff: Re: [Freesurfer] glmfit mismatch between X and C with same no of >> columns >> >> sorry, that is the log file. What I want is the terminal output, ie, when >> you run it, all the stuff that is printed to the screen. >> >> On 4/11/17 5:07 AM, Clara Kühn wrote: >> >> >> >> Hi Doug >> I am not conciously using a mask but I attached the glmfit.log >> At the end it actually states "ResidualFWHM -nan" >> >> How can I fix that? >> >> Cheers, Clara >> >> ----- Ursprüngliche Mail ----- >> Von: "Douglas N Greve" <gr...@nmr.mgh.harvard.edu> An: >> freesurfer@nmr.mgh.harvard.edu Gesendet: Montag, 10. April 2017 21:41:40 >> Betreff: Re: [Freesurfer] glmfit mismatch between X and C with same no of >> columns >> >> It estimates the FWHM from the residuals of the analysis (it does not >> use whatever value you smoothed it with). For some reason this estimate >> is not-a-number (NaN). Are you using a mask? Can you send the terminal >> output from running mri_glmfit? >> >> >> On 03/31/2017 03:29 AM, Clara Kühn wrote: >> >> >> >> ah, ok. I used the proper glmdir now with this command: >> mri_glmfit-sim --glmdir >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2/qdec/rmanova/ >> --cache-dir >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//average/mult-comp-cor/ >> --cache 3.0 abs --cwp 0.05 --2spaces >> >> And this is the terminal output: >> >> cmdline mri_glmfit --glmdir >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//qdec/rmanova/ --y >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//81kids_template/GLMprep/40kids-lh.thickness-rmanova.sm10.mgh >> --fsgd >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//qdec/rmanova/2017.03.27-40kids-rmanova.fsgd >> doss --C >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//qdec/rmanova/C-pre-vs-post.mtx >> >> WARNING: unrecognized mri_glmfit cmd option doss >> >> log file is >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2/qdec/rmanova//cache.mri_glmfit-sim.log >> >> cd /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2 >> /afs/cbs.mpg.de/software/freesurfer/5.3.0/ubuntu-xenial-amd64/bin/mri_glmfit-sim >> --glmdir /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2/qdec/rmanova/ >> --cache-dir >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//average/mult-comp-cor/ >> --cache 3.0 abs --cwp 0.05 --2spaces >> >> $Id: mri_glmfit-sim,v 1.36.2.5 2012/10/01 22:31:37 greve Exp $ >> Fri Mar 31 09:17:53 CEST 2017 >> Linux etsch 4.4.0-66-generic #87-Ubuntu SMP Fri Mar 3 15:29:05 UTC 2017 >> x86_64 x86_64 x86_64 GNU/Linux >> ckuehn >> setenv SUBJECTS_DIR /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2/ >> FREESURFER_HOME /afs/cbs.mpg.de/software/freesurfer/5.3.0/ubuntu-xenial-amd64 >> >> Original mri_glmfit command line: >> cmdline mri_glmfit --glmdir >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//qdec/rmanova/ --y >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//81kids_template/GLMprep/40kids-lh.thickness-rmanova.sm10.mgh >> --fsgd >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//qdec/rmanova/2017.03.27-40kids-rmanova.fsgd >> doss --C >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//qdec/rmanova/C-pre-vs-post.mtx >> >> DoSim = 0 >> UseCache = 1 >> DoPoll = 0 >> DoPBSubmit = 0 >> DoBackground = 0 >> DiagCluster = 0 >> gd2mtx = doss >> fwhm = -nan >> ERROR: cannot find >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//average/mult-comp-cor////cortex/fwhmNaN/abs/th30/mc-z.csd >> >> >> >> For some reason it doesn't recognize that I smoothed the data with --fwhm 10 >> during mris_surf2surf. And the other thing is, that it doesn't find the >> correct path for the mc-z.csd. It should be in >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//average/mult-comp-cor/81kids_template/lh/cortex/fwhm10/abs/mc-z.csd >> >> Cheers >> Clara >> >> ----- Ursprüngliche Mail ----- >> Von: "Douglas N Greve" <gr...@nmr.mgh.harvard.edu> An: >> freesurfer@nmr.mgh.harvard.edu Gesendet: Donnerstag, 30. März 2017 19:13:43 >> Betreff: Re: [Freesurfer] glmfit mismatch between X and C with same no of >> columns >> >> you are not giving it the proper glmdir dir. the glmdir is >> >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//qdec/rmanova >> >> >> On 03/30/2017 01:12 PM, Clara Kühn wrote: >> >> >> >> I tried this command: >> >> mri_glmfit-sim --glmdir >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//qdec/rmanova/C-pre-vs-post >> --cache-dir >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//average/mult-comp-cor/ >> --cache 3.0 abs --cwp 0.05 --2spaces >> >> and got this error: >> ERROR: cannot find >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//qdec/rmanova/C-pre-vs-post/mri_glmfit.log >> >> then I copied the .log file into the contrast directory C-pre-vs-post and >> tried the same command again and got this error: >> >> ERROR: could not determine file for >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//qdec/rmanova/C-pre-vs-post/mask >> >> Ususally I would run the MC on the lh-Diff-1-3-Intercept-long.area-spc >> folder but with the rmanova I get these two folders: >> 40kids-lh.thickness10-rmanova and C-pre-vs-post >> >> Cheers >> Clara >> >> ----- Ursprüngliche Mail ----- >> Von: "Douglas N Greve" <gr...@nmr.mgh.harvard.edu> An: >> freesurfer@nmr.mgh.harvard.edu Gesendet: Donnerstag, 30. März 2017 18:57:36 >> Betreff: Re: [Freesurfer] glmfit mismatch between X and C with same no of >> columns >> >> what do you mean that it did not seem to work? >> >> >> On 03/30/2017 11:25 AM, Clara Kühn wrote: >> >> >> >> Thank you! I completely didn't see that. It worked. >> >> I was wondering how to proceed next. The tutorial ends with running the >> glmfit command. I've tried correcting for multiple comparisons with Monte >> Carlo but that doesn't seem to work. How can I interpret the files that are >> the output from the repeated measures ANOVA? >> >> Cheers Clara >> >> ----- Ursprüngliche Mail ----- >> Von: "Douglas N Greve" <gr...@nmr.mgh.harvard.edu> An: >> freesurfer@nmr.mgh.harvard.edu Gesendet: Mittwoch, 29. März 2017 18:15:57 >> Betreff: Re: [Freesurfer] glmfit mismatch between X and C with same no of >> columns >> >> Since there are 40 subjects, you would only have 40+1 columns, not 80+1 >> >> >> On 03/29/2017 03:42 AM, Clara Kühn wrote: >> >> >> >> Hi Doug, >> >> I've also attached the fsgd file for you. Yes, I have 40 subjects and a >> contrast column. I adapted this from this tutorial: >> https://surfer.nmr.mgh.harvard.edu/fswiki/RepeatedMeasuresAnova where the >> example has 3 time points and therefore 2 contrast columns. Since I want to >> look at only 2 I only have one contrast column which is also my 81st column >> in the contrast matrix. >> >> Did I adapt it in a wrong way for my 2 timepoints? >> Cheers >> Clara >> >> ----- Ursprüngliche Mail ----- >> Von: "Douglas N Greve" <gr...@nmr.mgh.harvard.edu> An: >> freesurfer@nmr.mgh.harvard.edu Gesendet: Dienstag, 28. März 2017 18:37:58 >> Betreff: Re: [Freesurfer] glmfit mismatch between X and C with same no of >> columns >> >> I'm not sure what's in your FSGD file, but you design matrix has 41 >> columns and your contrast matrix has 80. I'm guessing that you have 40 >> subjects and that you created the contrast matrix based on DODS and not >> DOSS (see the web page on the rmanova about creating contrasts) >> >> >> On 03/28/2017 03:50 AM, Clara Kühn wrote: >> >> >> >> Sorry, I had a typo in the fsgd file. This is the correct command line and >> terminal output: >> >> mri_glmfit --glmdir $SUBJECTS_DIR/qdec/rmanova/ --y >> $SUBJECTS_DIR/81kids_template/GLMprep/40kids-lh.thickness-rmanova.sm10.mgh >> --fsgd $SUBJECTS_DIR/qdec/rmanova/2014.03.27-40kids-rmanova.fsgd doss --C >> $SUBJECTS_DIR/qdec/rmanova/C-pre-vs-post.mtx >> >> >> gdfReadHeader: reading >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//qdec/rmanova/2014.03.27-40kids-rmanova.fsgd >> INFO: DeMeanFlag keyword not found, DeMeaning will NOT be done. >> Continuous Variable Means (all subjects) >> 0 pre-vs-post 0 1 >> Class Means of each Continuous Variable >> 1 Subject1 0.0000 >> 2 Subject2 0.0000 >> 3 Subject3 0.0000 >> 4 Subject4 0.0000 >> 5 Subject5 0.0000 >> 6 Subject6 0.0000 >> 7 Subject7 0.0000 >> 8 Subject8 0.0000 >> 9 Subject9 0.0000 >> 10 Subject10 0.0000 >> 11 Subject11 0.0000 >> 12 Subject12 0.0000 >> 13 Subject13 0.0000 >> 14 Subject14 0.0000 >> 15 Subject15 0.0000 >> 16 Subject16 0.0000 >> 17 Subject17 0.0000 >> 18 Subject18 0.0000 >> 19 Subject19 0.0000 >> 20 Subject20 0.0000 >> 21 Subject21 0.0000 >> 22 Subject22 0.0000 >> 23 Subject23 0.0000 >> 24 Subject24 0.0000 >> 25 Subject25 0.0000 >> 26 Subject26 0.0000 >> 27 Subject27 0.0000 >> 28 Subject28 0.0000 >> 29 Subject29 0.0000 >> 30 Subject30 0.0000 >> 31 Subject31 0.0000 >> 32 Subject32 0.0000 >> 33 Subject33 0.0000 >> 34 Subject34 0.0000 >> 35 Subject35 0.0000 >> 36 Subject36 0.0000 >> 37 Subject37 0.0000 >> 38 Subject38 0.0000 >> 39 Subject39 0.0000 >> 40 Subject40 0.0000 >> INFO: gd2mtx_method is doss >> >> $Id: mri_glmfit.c,v 1.196.2.8 2012/11/01 18:51:41 greve Exp $ >> cwd /home/raid2/ckuehn >> cmdline mri_glmfit --glmdir >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//qdec/rmanova/ --y >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//81kids_template/GLMprep/40kids-lh.thickness-rmanova.sm10.mgh >> --fsgd >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//qdec/rmanova/2014.03.27-40kids-rmanova.fsgd >> doss --C >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//qdec/rmanova/C-pre-vs-post.mtx >> sysname Linux >> hostname parana >> machine x86_64 >> user ckuehn >> FixVertexAreaFlag = 1 >> UseMaskWithSmoothing 1 >> OneSampleGroupMean 0 >> y >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2/81kids_template/GLMprep/40kids-lh.thickness-rmanova.sm10.mgh >> logyflag 0 >> usedti 0 >> FSGD >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//qdec/rmanova/2014.03.27-40kids-rmanova.fsgd >> glmdir /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//qdec/rmanova/ >> IllCondOK 0 >> ReScaleX 1 >> DoFFx 0 >> Creating output directory >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//qdec/rmanova/ >> Loading y from >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2/81kids_template/GLMprep/40kids-lh.thickness-rmanova.sm10.mgh >> INFO: gd2mtx_method is doss >> Saving design matrix to >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//qdec/rmanova//Xg.dat >> Normalized matrix condition is 1 >> Matrix condition is 40 >> Pruning voxels by thr: 0.000000 >> Found 97361 voxels in mask >> Saving mask to >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//qdec/rmanova//mask.mgh >> search space = 97361.000000 >> ERROR: dimension mismatch between X and contrast >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//qdec/rmanova/C-pre-vs-post.mtx >> X has 41 cols, C has 81 cols >> >> >> ----- Ursprüngliche Mail ----- >> Von: "Douglas N Greve" <gr...@nmr.mgh.harvard.edu> An: >> freesurfer@nmr.mgh.harvard.edu Gesendet: Montag, 27. März 2017 19:49:04 >> Betreff: Re: [Freesurfer] glmfit mismatch between X and C with same no of >> columns >> >> Need command line and terminal output >> >> >> On 03/27/2017 09:08 AM, Clara Kühn wrote: >> >> >> >> Dear Freesurfer experts, >> >> I'm trying to run a repeated measures anova as described here: >> https://surfer.nmr.mgh.harvard.edu/fswiki/RepeatedMeasuresAnova I have 40 >> subjects with 2 time points each, so it's quite a large matrix. >> When running the mri_glmfit command I get the following error: >> >> ERROR: dimension mismatch between X and contrast >> /data/p_npsy001_neurotrain/kids_data/sem_con-tp1and2//qdec/rmanova/C-pre-vs-post.mtx >> X has 41 cols, C has 81 cols >> >> I'm not sure what to do as the matrix and the contrast (see attachments) >> actually have the same amount of columns... >> >> Any help would be much appreciated, thank you! >> Clara >> >> >> >> _______________________________________________ >> Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> _______________________________________________ >> Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> _______________________________________________ >> Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
