Thanks, Anastasia!! It should be it. I had run the same command before with slightly fewer subjects in my "set subjlist" and it did work fine. Then I rerun the -path (and added extra 18 subjects) to update the tracts with the recent implementation that you have done (FS 6). After, started having this issue with -stat.... However, I ended up running the dmri_group after manually creating the *inputs.txt files and it did work fine... ;-) Thanks, Amelia
-----Original Message----- From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Yendiki, Anastasia Sent: Wednesday, April 12, 2017 5:04 PM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] trac-all -stat Hi Amelia - This means that it can't find any of the tracts that you've specified (or any tracts period, if you haven't specified a list) for the subjects that you've specified in your config file. It'd be looking under: /data/dprojects/BIOS/tracula/$subj/dpath/ Best, a.y ________________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Versace, Amelia [versa...@upmc.edu] Sent: Wednesday, April 12, 2017 5:00 PM To: Freesurfer support list Subject: [Freesurfer] trac-all -stat Hi Anastasia, I am having some issues with the -stat option. Below is the error. I am not sure of what's causing the issue. Any idea? Thanks a lot!! Amelia ----------------- trac-all -c scripts/dmrirc.stats -stat INFO: SUBJECTS_DIR is /data/dprojects/BIOS/freesurfer INFO: Diffusion root is /data/dprojects/BIOS/tracula Actual FREESURFER_HOME /data/software/freesurfer6 ERROR: no pathway reconstructions found --------------------- _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
