You can use mri_coreg to register the volume to fsaverage, then use the
registration when running freeview or tksurfer
On 5/9/17 10:19 AM, james pardon wrote:
Thank you Bruce. What if the nifti volume has not been processed at
all in Freesurfer? My only aim is to illustrate an overlay on
FSAVERAGE, with the obvious caveat of skipping surface construction
for this nifti.
Thanks,
James
On Tue, May 9, 2017 at 2:42 PM, Bruce Fischl
<fis...@nmr.mgh.harvard.edu <mailto:fis...@nmr.mgh.harvard.edu>> wrote:
if the nifti volume is from an individual subject that has been
run through recon-all (e.g. an fmri map):
1. Use bbregister to register the fmri to the recon surfaces
2. Use mri_volsurf to sample the fmri data onto the surface
3. Use mri_surf2surf to map from the individual to fsaverage
cheers
Bruce
On Tue, 9 May 2017, james pardon wrote:
Dear All,
Apologies in advance for the naive question. Could you please
let me know
what is the best way of transferring a nifti overlay volume to
fsaverage,
solely for illustration purposes? I think I should start by
registering with
fsaverage volume and then overlay with Freeview, but I'm not
sure what tools
from Freesurfer I should use for 1) between subject volume
registration
(nifti volume to fsaverage volume) 2) fsaverage volume to
fsaverage surface.
Thank you,
James
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