Hi Jon
CT doesn't usually provide any gray/white contrast, so I don't think it
can work. The dicom issue is a separate one. We should be able to read
most dicoms, but of course this is the issue with an "evolving standard".
cheers
Bruce
On
Wed, 28 Jun 2017, John Anderson wrote:
Dear Freesurfer experts,
I have T1 images acquired using CT scan not MRI. I have the following
questions please:
1. "mri_convert" failed to convert the dicoms to nifti, so I used "dcm2nii"
part of mricron to convert the dicoms to nifti. I am wondering if there are
any tools in Freesurfer to convert CT scan dicoms to nii or mgz formats
2. Can this type of images be processed in Freesufrer using the traditional
pipeline for surfaces reconstruction. I mean using "recon-all"
Thank you for your guidance
Jon
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