what is your freeview command?
On 07/14/2017 08:46 AM, John Anderson wrote: > >> Dear Freesurfer experts, >> I want to derive registration matrix between pcasl image and the >> structural space in Freesurfer (i.e. orig.mgz) >> If I open orig.mgz and the pcasl image in Freesurefr I see overlap >> between the images (attached Figure1). >> When I use "spmregister" as follow: >> spmregister --mov perfusion_calib.nii.gz --s SUBJ --reg reg.dat >> --fsvol orig --o CBF_T1.nii >> >> Then visualize "CBF_T1" using freeview I see mis-registration >> (attached Figure2) >> >> Please what I am doing wrong? >> Thank you for any guidance >> Jon >> > > > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center [email protected] Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
