Did you get exactly the same error?
On 07/14/2017 02:05 AM, M Janani wrote: > > Hi Douglas Greve > <https://www.mail-archive.com/[email protected]&q=from:%22Douglas+Greve%22>, > > Thanks for your support. > > I tried with the --reshape-factor 6. But it didn’t work for me. > > The segmentation was created using the below mentioned data > > 1.SPM standard ROI > > 2..dat file generated using the T1.nii(available in SPM8 template) and > fsaverage. > > Please help us to proceed further. > > Regards, > > Janani > > ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- > > How did you create the segmentation? You can change the shape of the > seg with mri_surf2surf --reshape 6 --s fsaverage --hemi lh --sval > seg.mgh --tval seg.reshape.mgh > > On 7/7/17 10:15 AM, M Janani wrote: > Hi Team, > > I'm attempting to extract cortical thickness values for a > region-of-interest (ROI) defined in volume spacesubject for PiB MRI. > > I got the below mentioned error while computing the stats value > cwd > > cmdline mri_segstats --seg > freesurfer/subjects/fsaverage/surf/lh.fsaverage.CBLROI.mgh --in > lh.thickness.fsaverage.mgh --sum segstats-CBLROI.txt > > sysname Linux > hostname teslak80 > machine x86_64 > user lakshman > UseRobust 0 > Loading /freesurfer/subjects/fsaverage/surf/lh.fsaverage.CBLROI.mgh > Loading lh.thickness.fsaverage.mgh > ERROR: dimension mismatch between input volume and seg > input 27307 1 6 > seg 23406 1 7 > > I tried with the solution provided in the below mail, but it didn’t > work for me > > https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2013-January/027405.html > > <https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2013-January/027405.html> > > <https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2013-January/027405.html> > > Any help would be really helpful. > Regards, > Janani > ::DISCLAIMER:: > ---------------------------------------------------------------------------------------------------------------------------------------------------- > > The contents of this e-mail and any attachment(s) are confidential and > intended for the named recipient(s) only. E-mail transmission is not > guaranteed to be secure or error-free as information could be > intercepted, corrupted, lost, destroyed, arrive late or incomplete, or > may contain viruses in transmission. The e mail and its contents (with > or without referred errors) shall therefore not attach any liability > on the originator or HCL or its affiliates. Views or opinions, if any, > presented in this email are solely those of the author and may not > necessarily reflect the views or opinions of HCL or its affiliates. > Any form of reproduction, dissemination, copying, disclosure, > modification, distribution and / or publication of this message > without the prior written consent of authorized representative of HCL > is strictly prohibited. If you have received this email in error > please delete it and notify the sender immediately. Before opening any > email and/or attachments, please check them for viruses and other > defects. > > ---------------------------------------------------------------------------------------------------------------------------------------------------- > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > The information in this e-mail is intended only for the person to whom > it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you > in error > but does not contain patient information, please contact the sender > and properly > dispose of the e-mail. > > > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center [email protected] Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
