Hi Doug, Thank you for your reply, I have used the tool *surf_cluster* to have the MNI coordinates. Is it a good alternative to *mri_cor2label *?
Thank you very much, Regards, Redwan On Wed, Jul 26, 2017 at 2:41 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: > mri_cor2label with extract the coordinates into a label file. The > coordinates will be in "tkregisterRAS". What coordinate system do you > want? See > > See https://surfer.nmr.mgh.harvard.edu/fswiki/CoordinateSystems > > > On 07/25/2017 07:32 PM, Redwan Maatoug wrote: > > Hi experts, > > > > I just want to know a way to extract the coordinates from a ROI mgh file. > > > > I know that I can load the file with tksurfer but I have 100 .mgh > > files so if I could run a command line to have the coordinates in a > > .txt file or in a .m it would be helpful. > > > > Thank you, > > Redwan > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
