Hi Bruce, Thanks for the response. I just uploaded the subject using the ftp file exchange. The issue is visible in the region close to voxel coordinate [172, 123 ,134]. the missing gyrus is capped between coronal slice 141 to 118. I forgot to mention in my first message that we used a T2 to improve pial surface after initial running with just the T1.
Thanks again Jake Biomedical Engineer, Brain Rehabilitation Research Center Malcolm Randall VA Medical Center, 1601 SW Archer Road, Gainesville, FL 32608 Phone: 1-352-376-1611 ext. 5249, E-mail: [email protected] On Wed, Jul 26, 2017 at 8:16 PM, Bruce Fischl <[email protected]> wrote: > Hi Jake > > usually that means that there is a topology defect that is being > incorrectly fixed. If you upload the subject and point us at the voxel > coords we will take a look > > cheers > Bruce > > On Wed, 26 Jul 2017, Jake Rieke wrote: > > > Hello surfers, > > > > I'm attempting to extend white and pial surfaces to encompass an > > unrecognized gyrus. The wm.mgz seems include the WM tissue, but the white > > surface does not extend to the WM boundary. I thought this might be > related > > to an intensity normalization error and tried using control points, but > that > > did not make a big difference in the resulting surfaces. I've attached > > pictures to better illustrate the problem. Thanks in advance for your > help! > > > > Best regards, > > Jake > > > > > > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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