Thank you so much. That was really helpful. ________________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Monday, August 07, 2017 7:15 AM To: Freesurfer support list Subject: Re: [Freesurfer] Thalamus ROI
Hi Sara sure, you can look up the thalamus labels in FreeSurferColorLUT.txt (10 and 49 for lh and rh), then use either mri_extract_labels or mri_binarize to pull our ROIs. cheers Bruce On Mon, 7 Aug 2017, sarai...@alumni.ubc.ca wrote: > Hi Freesurfer team, > Is it possible to extract Thalamus as an ROI from aseg.mgz to be used for > tractography in FSL. > If so, what command I have to use to extract it. > Can I use the LUT table to extract thalamus? > > Thanks, > Sara > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
