Hi Elijah

gcuts is a contributed tool (from Mike Chee's lab) and not one that we wrote, so I don't think we can help.

On Wed, 9 Aug 2017, Elijah Mak wrote:

Hi Freesurfer Team,

I am using gcut to improve the skull stripping on some subjects. I noticed
that it is also removing some of the voxels in the ventricles of the
brainmask.mgz (picture attached). Is this normal behaviour? 

Thanks for your time.

Best Wishes,

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