Can you send me the file?
On 08/09/2017 04:17 AM, Suzanne Witt wrote: > Hi. > > I am having a problem similar to that previously described on the freesurfer > message boards from May 2011 (Subject: mgh conversion). Unfortunately, that > thread ends with Doug asking the person to send him the files in question, so > there does not appear to be any sort of publicly published solution. > > I was sent two .mgh files with the resulting activation maps from an fMRI > analysis (both left and right hemispheres) and told that the maps were in > fsaverage space. I was not sent any other accompanying files. I am trying > to convert them to nii format. > > I have tried both: > > 1. mri_convert filename.mgh filename.nii.gz > > and mri_surf2surf (as was suggested in the previous thread) > > 2. mri_surf2surf —sval filename.mgh —tval filename.nii —reshape > —reshape-factor 6 —s fsaverage —hemi lh > > (I realize that the command options should be preceded by double dashes, but > my email program is quite insistent about automatically formatting these to > long dashes.) > > In both cases the when checking the output file using mri_info, the > dimensions are still: 163842 x 1 x 1. > > Are there any suggestions as to how best to proceed? > > Thanks in advance, > > Suzanne Witt > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
