you mean instead of colors? I guess it would be easy enough to do in matlab. Read in the aseg, use find to find the indices of all the voxels with a particular label, then replace the label with whatever intensity you want.
cheers Bruce On Sat, 12 Aug 2017, Martin Kavec wrote: > Dear all, > > I ran my subjects through recon-all successfully. I am in a need to have > custom intensities for segmentation and parcellation in aparc+aseg. Say, 10 > - ventricles, 20 - amygdala, 30 - putamen, ... > > I would appreciate advice on how I could achieve that. > > Thanks in advance, > > Martin > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
