you mean instead of colors? I guess it would be easy enough to do in 
matlab. Read in the aseg, use find to find the indices of all the voxels 
with a particular label, then replace the label with whatever intensity 
you want.

On Sat, 12 Aug 2017, Martin Kavec wrote:

> Dear all,
> I ran my subjects through recon-all successfully. I am in a need to have
> custom intensities for segmentation and parcellation in aparc+aseg. Say, 10
> - ventricles, 20 - amygdala, 30 - putamen, ...
> I would appreciate advice on how I could achieve that.
> Thanks in advance,
> Martin
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