What about volume? For surface, it seems that it is ok. On Tue, Aug 22, 2017 at 1:29 AM Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote:
> > whatever annotation you give it (eg, aparc). There are not separate > labels for the inner and the outer. The distinction is in the xyz > coordinates. If you don't give it a surface, it will use the xyz coords > from the inner (white) surface. If you give it --surface pial, it will > use the xyz coords from the outer > > > > On 08/21/2017 04:33 PM, Fereshte wrote: > > And what labels does this mri_annotation2label give? Does it give the > > outer cortical boundary as well? > > On Tue, Aug 22, 2017 at 12:19 AM Douglas N Greve > > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: > > > > when you run mri_annotation2label you can specify the surface > > (--surface). By default, it uses white, but you can specify pial > > instead > > > > > > On 08/21/2017 11:33 AM, Fereshte wrote: > > > Hello FreeSurfer developers, > > > Is it possible to have the segmentation labels after the pial > > surface > > > is done in FreeSurfer? I mean once you do the topology > > correction and > > > expand the inner cortical boundary to make the pial surface ; is it > > > possible to have the inner and outer cortical boundaries as labels > > > from pial surface? > > > Looking forward to hearing from you > > > Sincerely, > > > Fereshte Ramezani > > > > > > > > > _______________________________________________ > > > Freesurfer mailing list > > > Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > -- > > Douglas N. Greve, Ph.D. > > MGH-NMR Center > > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > > Phone Number: 617-724-2358 > > Fax: 617-726-7422 > > > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > Outgoing: > > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu <mailto: > Freesurfer@nmr.mgh.harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to > > whom it is > > addressed. If you believe this e-mail was sent to you in error and > > the e-mail > > contains patient information, please contact the Partners > > Compliance HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to > > you in error > > but does not contain patient information, please contact the > > sender and properly > > dispose of the e-mail. > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >
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