Dear Lara, The sh script implements a longitudinal segmentation algorithm that segments both time points simultaneously using a subject specific atlas, improving the reliability of the segmentation. You can read the details here http://www.sciencedirect.com/science/article/pii/S1053811916303275 Cheers Eugenio
Sent from my phone, please excuse brevity and typos ________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Lara Foland-Ross <lfol...@stanford.edu> Sent: Thursday, September 14, 2017 2:38:45 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] hippocampus subfields in longitudinal dataset Hello Freesurfer experts, I have a longitudinal data set already processed in the longitudinal pipeline of v5.3. I'd now like to use the hippocampus subfield commands available in 6.0. I'm wondering whether I will arrive at the same result using either of the following two approaches: 1. run "recon-all -s ${subjTp} -hippocampal-subfields-T1" separately on the time1 and time 2 longitudinal scans 2. run longHippoSubfieldsT1.sh Thanks in advance, Lara _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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