Hi Gabor you don't want to specify -noaseg. That tells recon-all not to use the aseg. I think autorecon2-cp and autorecon3 should do the trick
cheers Bruce On Tue, 26 Sep 2017, Gabor Perlaki wrote: > Dear Bruce, > > I've corrected the lateral ventricles in the aseg.presurf.mgz and ran > "recon-all -autorecon2-noaseg > -autorecon3 -subjid". Although the labels in aseg.mgz is fine the surfaces > (and midline cut) > remained bad. Any other idea how to correct this type of error? > > Best Regards, > Gabor > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
