Hello Dr. Greve, Sorry for the late response; I thought my initial description was enough.
As far as I understand, the fMRI version of this code would automatically define an ROI based on cluster-extent based tresholding of functional data that contains the significant regions. Then loads a selected anatomical ROI(like a label) for comparison with this functional area, and I am not entirely sure how this comparison works but at the end outputs, I guess, an estimation of this area and produces an anatomical+functional "label." The anatomical label it uses comes from Freesurfer and I found this code in a website related to Martinos center (https://martinos.org/mne/stable/index.html) so I wanted to take my chances for asking about it here. I am basically looking for a way to define ROIs automatically in freesurfer. Best, Idil ________________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [gr...@nmr.mgh.harvard.edu] Sent: Tuesday, September 26, 2017 12:53 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] generating automatic functional label Hi Idil, I'm not going to plow through someone else's code:) If you want to summarize what it does, I might be able to figure out if we have something that does it. On 09/25/2017 03:21 PM, Yagmur Ozdemir 19 wrote: > Hello FreeSurfer developers, > > This is a piece of code I came across for producing a functional label > with using time course estimates from MEG/EEG data, for freesurfer > use. I am wondering if something similar is available to estimate a > functional label/region from fMRI data with similar tresholding. > > https://martinos.org/mne/stable/auto_examples/inverse/plot_label_from_stc.html#generate-a-functional-label-from-source-estimates > > Best, > Idil > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
