Thank you for the input. Jim
-----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of Douglas Greve Sent: Friday, October 13, 2017 10:09 AM To: [email protected] Subject: Re: [Freesurfer] cortical surface area The 2nd is the one you want as the first one includes non cortical structures in the medial wall. On 10/12/17 6:35 PM, Alexopoulos, Dimitrios wrote: > Thanks. > > I ran this command: > mris_anatomical_stats subjectID lh pial > It gave me a total surface area of 115007 mm^2 > > I also tried the following command from within the 'label' directory: > mris_anatomical_stats -l lh.cortex.label -f lh.cortex.stats -b subjectID lh > pial > It gave me a total surface area 109458 mm^2 > > Which is the correct method and value for total cortical surface area? > > Jim > > > -----Original Message----- > From: [email protected] > [mailto:[email protected]] On Behalf Of Bruce Fischl > Sent: Thursday, October 12, 2017 5:17 PM > To: Freesurfer support list <[email protected]> > Subject: Re: [Freesurfer] cortical surface area > > oh, sorry, I missed the 5.3 part. YOu can always compute it for a subject > via: > > mris_anatomical_stats <subject> <hemi> pial > > cheers > Bruce > On Thu, 12 Oct 2017, > Alexopoulos, Dimitrios wrote: > >> I don't see this file in the stats directory using FS 5.3. >> >> Jim >> >> -----Original Message----- >> From: [email protected] >> [mailto:[email protected]] On Behalf Of Bruce >> Fischl >> Sent: Thursday, October 12, 2017 4:52 PM >> To: Freesurfer support list <[email protected]> >> Subject: Re: [Freesurfer] cortical surface area >> >> Hi Jim >> >> check the ?h.aparc.pial.stats file. I think the total surface area should be >> in there. >> >> cheers >> Bruce >> On Thu, 12 Oct 2017, Alexopoulos, Dimitrios wrote: >> >>> Specifically, where in the aparc.stats file (or other file) is the cortical >>> surface area? >>> I only see default output for 'WhiteSurfArea'. >>> >>> Jim >>> >>> >>> -----Original Message----- >>> From: [email protected] >>> [mailto:[email protected]] On Behalf Of Douglas >>> N Greve >>> Sent: Thursday, October 12, 2017 4:16 PM >>> To: [email protected] >>> Subject: Re: [Freesurfer] cortical surface area >>> >>> mm2 >>> >>> >>> On 10/12/2017 02:15 PM, Alexopoulos, Dimitrios wrote: >>>> What measure is for the cortical surface area? >>>> >>>> The measure in the aparc.stats file states 'WhiteSurfArea' >>>> >>>> Jim >>>> >>>> -------------------------------------------------------------------- >>>> - >>>> - >>>> -- >>>> >>>> The materials in this message are private and may contain Protected >>>> Healthcare Information or other information of a sensitive nature. >>>> If you are not the intended recipient, be advised that any >>>> unauthorized use, disclosure, copying or the taking of any action in >>>> reliance on the contents of this information is strictly prohibited. >>>> If you have received this email in error, please immediately notify >>>> the sender via telephone or return mail. >>>> >>>> >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> [email protected] >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> -- >>> Douglas N. 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If you have received this email >> in error, please immediately notify the sender via telephone or return mail. >> >> _______________________________________________ >> Freesurfer mailing list >> [email protected] >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > ________________________________ > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you are > not the intended recipient, be advised that any unauthorized use, disclosure, > copying or the taking of any action in reliance on the contents of this > information is strictly prohibited. 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