Thank you for the input. Jim
-----Original Message----- From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas Greve Sent: Friday, October 13, 2017 10:09 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] cortical surface area The 2nd is the one you want as the first one includes non cortical structures in the medial wall. On 10/12/17 6:35 PM, Alexopoulos, Dimitrios wrote: > Thanks. > > I ran this command: > mris_anatomical_stats subjectID lh pial > It gave me a total surface area of 115007 mm^2 > > I also tried the following command from within the 'label' directory: > mris_anatomical_stats -l lh.cortex.label -f lh.cortex.stats -b subjectID lh > pial > It gave me a total surface area 109458 mm^2 > > Which is the correct method and value for total cortical surface area? > > Jim > > > -----Original Message----- > From: freesurfer-boun...@nmr.mgh.harvard.edu > [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl > Sent: Thursday, October 12, 2017 5:17 PM > To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > Subject: Re: [Freesurfer] cortical surface area > > oh, sorry, I missed the 5.3 part. YOu can always compute it for a subject > via: > > mris_anatomical_stats <subject> <hemi> pial > > cheers > Bruce > On Thu, 12 Oct 2017, > Alexopoulos, Dimitrios wrote: > >> I don't see this file in the stats directory using FS 5.3. >> >> Jim >> >> -----Original Message----- >> From: freesurfer-boun...@nmr.mgh.harvard.edu >> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce >> Fischl >> Sent: Thursday, October 12, 2017 4:52 PM >> To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> >> Subject: Re: [Freesurfer] cortical surface area >> >> Hi Jim >> >> check the ?h.aparc.pial.stats file. I think the total surface area should be >> in there. >> >> cheers >> Bruce >> On Thu, 12 Oct 2017, Alexopoulos, Dimitrios wrote: >> >>> Specifically, where in the aparc.stats file (or other file) is the cortical >>> surface area? >>> I only see default output for 'WhiteSurfArea'. >>> >>> Jim >>> >>> >>> -----Original Message----- >>> From: freesurfer-boun...@nmr.mgh.harvard.edu >>> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas >>> N Greve >>> Sent: Thursday, October 12, 2017 4:16 PM >>> To: freesurfer@nmr.mgh.harvard.edu >>> Subject: Re: [Freesurfer] cortical surface area >>> >>> mm2 >>> >>> >>> On 10/12/2017 02:15 PM, Alexopoulos, Dimitrios wrote: >>>> What measure is for the cortical surface area? >>>> >>>> The measure in the aparc.stats file states 'WhiteSurfArea' >>>> >>>> Jim >>>> >>>> -------------------------------------------------------------------- >>>> - >>>> - >>>> -- >>>> >>>> The materials in this message are private and may contain Protected >>>> Healthcare Information or other information of a sensitive nature. >>>> If you are not the intended recipient, be advised that any >>>> unauthorized use, disclosure, copying or the taking of any action in >>>> reliance on the contents of this information is strictly prohibited. >>>> If you have received this email in error, please immediately notify >>>> the sender via telephone or return mail. >>>> >>>> >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> -- >>> Douglas N. 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If you have received this email >>> in error, please immediately notify the sender via telephone or return mail. >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> ________________________________ >> The materials in this message are private and may contain Protected >> Healthcare Information or other information of a sensitive nature. If you >> are not the intended recipient, be advised that any unauthorized use, >> disclosure, copying or the taking of any action in reliance on the contents >> of this information is strictly prohibited. If you have received this email >> in error, please immediately notify the sender via telephone or return mail. >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > ________________________________ > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you are > not the intended recipient, be advised that any unauthorized use, disclosure, > copying or the taking of any action in reliance on the contents of this > information is strictly prohibited. If you have received this email in error, > please immediately notify the sender via telephone or return mail. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
