I'm not sure what you mean/want. If you run preproc-sess with the
-mni305 flag, it will resample to mni305 space and mask out
non-subcortical structures
On 10/12/17 11:14 AM, Jan Willem Koten wrote:
Normalize to mni
Dear Doug,
We have a very simple question. In a first step we segmented brains
using the recon all command. Our functional pipeline created a
„fstcmc.nii.gz“ file. We would like to do some subcortical analysis
and need to perfrorm this in MNI 305 space. We also need the
subcortical labels for the actual analysis itself. Does someone know
the trick? In short how do we get from fstcmc.nii.gz“ to subcortical
functional ROI's?
Greetings Jan
Jan Willem Koten (van Grevenbicht)
Zollernstrasse 57, 52070 Aachen, Germany
Telephone: (0049) (0)241 212 44
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