Hi Sean, Satra and Bruce,
We just recently ran them all with v5.3 and did quite a few edits, especially to the subject ending in 10. Remember, we asked you for help, Bruce? 5
I had asked before if someone was interested in us uploading the work since we took quite some care in doing it, but there was no answer. I can upload them to a Martinos file drop tomorrow morning if you want.
Cheers,
Mel
On Oct 19, 2017 9:41 PM, Satrajit Ghosh <sa...@mit.edu> wrote:
hi sean,i think i ran those in june 2013 at ohbm. however, my recollection of how it failed is encoded in that mail thread.it may be worthw hile to just run through those images with freesurfer 6.0.since it's only 6 brains, we can try running it through again.cheers,
satraOn Thu, Oct 19, 2017 at 3:29 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote:Hi Seán
I'm not sure. I think Satra posted the original issue, so maybe he knows. Satra?
cheers
Bruce
On Thu, 19 Oct 2017, Seán Froudist Walsh wrote:
Hi,
Was the following issue ever solved? (sorry hit send too early!)
https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg50297.html
I tried and, like the previous two people it fails on mri_watershed.
https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg50297.html
Best wishes,
Sean
Hi Mike
it's hard to say without looking at the data. if you upload the subject dir we will take a look
Bruce
On Thu, 24 Nov 2016, Michael Craig wrote:
Hi All,
I am trying to run recon-all on the Allen Brain Institute T1 images. It works
without any issue on all but one subject (H0351.1009).
I saw this post from a few years ago describing the exact problem I’m having,
but don’t see a solution. Has anyone figured out how to get this subject to run
in recon-all? Or is it simply a matter of there not being enough contrast
between grey and white matter? Thanks for the help!
https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2013-July/031482.html
Best wishes,
Mike
On 19 October 2017 at 15:05, Seán Froudist Walsh <froud...@tcd.ie> wrote:
Hi,
Was the following issue ever solved?
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