Dear Dr. Greve,
I checked $FREESURFER_HOME/bin in Stable 6 and 3dvolreg.afni is indeed missing
but I found it in 5.3.
However, I don't have permission to copy the file from 5.3 over to Stable 6:
cannot create regular file
`/autofs/cluster/freesurfer/centos6_x86_64/stable6/bin/3dvolreg.afni':
Permission denied
Is there a way to get this done? Thanks so much for the help!
--Eugene
________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas Greve
<gr...@nmr.mgh.harvard.edu>
Sent: Wednesday, October 25, 2017 5:39:27 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Preproc-sess Error
it is not in $FREESURFER_HOME/bin ? If not, you can copy it from 5.3
On 10/25/17 4:59 PM, Hsu, Eugene wrote:
Hi FreeSurfer Experts,
We're trying to run preproc-sess on FreeSurfer 6, but we're encountering an
error when motion correcting:
ERROR: cannot find AFNI command 3dvolreg.afni
When we tried Freesurfer 5.3 the preproc-sess ran to completion.
Thanks for your help!
--Eugene
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