Dear Eugenio, The freesurfer version commands tells me that I run the freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c version. Before using segmentHA_T1.sh command, I run the recon-all -all -s bert one and it worked. Of course, recon-all also worked, telling be how to use it properly.
Regards, Alexandre 2017-10-26 17:08 GMT+02:00 Alexandre Obert <obert.alexan...@gmail.com>: > Dear all, > > I'm would like to run a hippocampal segmentation on my data. > However, I'm a beginner with freesurfer thus, I juste try to run the > commands with subject training data. > I first try to run commands following the recent development ( > https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfieldsAndNucleiO > fAmygdala). However, terminal says that the command segmentHA.sh doesn't > exist. > > I guess that it could be linked to the fact that I used bash in Windows > but I can't find a way to check this..; > > Any idea ? > > Regards, > > Alexandre >
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