My apologizes, I missed forgot to include the following information:
1. FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 2. Platform: CentOS release 6.7 3. uname -a: Linux rosalia-PORTEGE-Z930 4.4.0-98-generic #121-Ubuntu SMP Tue Oct 10 14:24:03 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux 4. Recon-all.log: see attached 2017-11-12 18:50 GMT+01:00 Rosalia Dacosta Aguayo <rdacos...@gmail.com>: > Hello FreeSurfer Developers, > > I am attempting to compute autorecon1 in a subject to see how it works > recon-all in a stepwise as described in the tutorial. > Sorry if this is a very naive question but it is the first time I am > trying to run an analysis with FreeSurfer. > > After running: *r* > *econ-all -subjid 001 -autorecon1 -i S_001.nii.gz* > > I have found that it crashes with the following warning: *recon-all -s > 001 exited with ERRORS at dom * > I have seen that the problem comes from orig_nu.log > > Does anyone have any thoughts on how to trouble-shoot this problem? I have > attached the recon-all.log and the orig_nu.log in case it is of any use. > > Kind regards, > Rosalia > >
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