Dr. Fischl,

Thank you for the suggestion, I believe a --label-list option still does a 
one-on-one comparison but I will think about it. 
Another question: in the annotation file option, does the script look at the 
names of labels in the annotation file to match labels across annotation files 
for comparison or does it proceed from the list ordering?

Best
Idil
________________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu 
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl 
[fis...@nmr.mgh.harvard.edu]
Sent: Saturday, November 18, 2017 5:43 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] % overlap of multiple labels

Hi Idil

I think you can use --label-list for multiple labels, or stuff them into
annot files and it should do everything it finds.

cheers
Bruce
On Fri, 17 Nov 2017,
Yagmur Ozdemir 19 wrote:

> Hello Freesurfer experts,
>
> I am using the mris_compute_parc_overlap command to compute the % overlap of 
> two labels of the same
> region. Is there a way to do this for multiple labels?
>
> Best
> Idil
>
>
>
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