I cannot replicate this. There must be some strange permission error. Can you try to make a new analysis with a different name and just see if fails?
On 2/4/18 12:50 PM, Yagmur Ozdemir 19 wrote: > Hello Dr. Greve, > > The analysis.info file is below. I should also say that, when I am trying to > create new analysis and contrast files, while creating the .config file for > contrast, th system gives the same error saying that it cannot enter the file. > > # FSBUILD freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c > # MKAVERSION $Id: mkanalysis-sess,v 1.78 2015/12/10 22:51:30 zkaufman Exp $ > # MKACMD /home/vm01/local/freesurfer/fsfast/bin/mkanalysis-sess -surface self > lh -analysis rtopyTR2.lh -paradigm rtopy.par -TR 2 -nconditions 1 > -event-related -fwhm 5 -per-run -fsd bold -refeventdur 10 -gammafit 2.25 1.25 > -force > # DATE Tue Jan 30 07:14:05 EST 2018 > > analysis rtopyTR2.lh > mcstem fmcpr > fsd bold > TR 2 > RegDOF 6 > PerSession 0 > RawSpace surface self lh > mask brain > RawFWHM 5 > RawSTC none > nSliceGroups 1 > UseB0DC 0 > ApplySubCortMask 1 > inorm 100 > acfbins 30 > fixacf 1 > acffwhm 20 > acfsvd 0 > designtype event-related > nskip 0 > polyfit 2 > HPFCutoffHz 0 > HeteroGCor 0 > nconditions 1 > parname rtopy.par > RefEventDur 10 > timewindow 40.000000 > prestim 0 > TER 0.050000 > gamma 2.25 1.25 2 0 > stimulusdelay -1.00000000000000000000 > Condition 1 Condition01 > > Best, > Idil > ________________________________________ > From: freesurfer-boun...@nmr.mgh.harvard.edu > [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas Greve > [gr...@nmr.mgh.harvard.edu] > Sent: Saturday, February 03, 2018 9:21 PM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] fast_selxavg3.m error/analysis.info file > > Strange. Can you send me the analysis.info file? > > > On 1/31/18 9:26 AM, Yagmur Ozdemir 19 wrote: >> Hello Dr. Greve, >> >> Yes it exists. The output below was with debug option. >> >> Best >> Idil >> ________________________________________ >> From: freesurfer-boun...@nmr.mgh.harvard.edu >> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas Greve >> [gr...@nmr.mgh.harvard.edu] >> Sent: Tuesday, January 30, 2018 8:40 PM >> To: freesurfer@nmr.mgh.harvard.edu >> Subject: Re: [Freesurfer] fast_selxavg3.m error/analysis.info file >> >> Does the file >> /home/vm01/local/freesurfer/Project_bold/rtopyTR2.rh/analysis.info exist? If >> so, can you run it with -debug as the first option and send the terminal >> output? >> >> On 1/30/18 8:51 AM, Yagmur Ozdemir 19 wrote: >> >> >> Hello FreeSurfer experts, >> >> I am getting this strange error when running selxavg3-sess. (in selxavg3 >> command I am calling the analysis file with: -a rtopyTR2.rh) When the system >> enters fast_selxavg3, it cannot read analysis.info, thus produces the >> following output: >> >> #@# Sess05 ############################### >> /home/vm01/local/freesurfer/Project_bold/Sess05 >> ------------------------- >> $Id: fast_selxavg3b.m,v 1.4 2016/05/04 22:16:47 greve Exp $ >> ------------------------- >> outtop = /home/vm01/local/freesurfer/Project_bold >> Extension format = nii.gz >> ERROR: could not open rtopyTR2.rh/analysis.info >> else >> else >> echo "------------------------------------------" | tee -a $LF >> echo ------------------------------------------ >> tee -a >> /home/vm01/local/freesurfer/Project_bold/log/selxavg3-sess-bold-rtopyTR2.rh-180130082919.log >> ------------------------------------------ >> rm $MLF >> rm /tmp/selxavg3-sess-10173.m >> if ( ! -e $okfile ) then >> if ( ! -e /tmp/selxavg3-sess-10173.ok ) then >> echo "ERROR: fast_selxavg3() failed\n" ; >> echo ERROR: fast_selxavg3() failed\n >> ERROR: fast_selxavg3() failed\n >> exit 1 ; >> exit 1 >> >> The analysis folder it is referring to( rtopyTR2.rh) is in the directory >> from which I am calling selxavg3-sess. It has the analysis.info file in >> which doesn't have any restrictions. To troubleshoot, I moved the folder to >> inside the session's functional directory and inside the session folder and >> these didn't create any changes. I looked at the script and tried to debug >> there but didn't give any results. It gave a similar error when trying to >> open the config file of contrast in mkcontrast-sess. (I also don't have root >> access)Any help is appreciated! >> >> Best, >> Idil >> >> >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
