Hello,

We are trying to project a volume map onto a surface. Our network based
volume map is a .vmp file and our surface is a nifti file. We were able to
convert the volume maps from .vmp to nifti.
Our volume map is: negative_allsocial_proportion.nii
Our surface is: SN_like_cortical_lh.nii
The output file is named: neg_allsocial.nii

We are trying to use the following command to now project the volume map on
surface and the issues we are facing are:
1) We are unsure of what the purpose of the registration file is and where
in the mir_vol2surf command should we specify the surface
2) If it is a matrix for something related to the surface on which we want
to project our volume then how should we go about obtaining the
registration file appropriate for our comparison.

*Command:*
mri_vol2surf --src negative_allsocial_proportion.nii --src_type analyze
--srcreg [REGISTRATION MATRIX] --hemi lh --o ./neg_allsocial.nii --projfrac
0.5

*Then to project it:*
tksurfer fsaverage lh inflated -ov neg_allsocail.nii
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