Do you have tcsh properly installed? You can check by running the command “tcsh --version”.
If it is installed, I’m not quite sure why you’re experiencing this problem, but I would suggest modifying the freeview script at /home/lisak/Desktop/freesurfer/bin/freeview to debug. Try adding the following line right before the call to “freeview.bin $argv”: echo $PATH and send the output over. best Andrew From: Darko Komnenić <komnen...@gmail.com> Date: Tuesday, April 17, 2018 at 11:35 AM To: "Hoopes, Andrew" <ahoo...@mgh.harvard.edu> Cc: FS Help <freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] unable to open freeview Hi Andrew, FreeSurfer is being sourced automatically each time I open the terminal, and I see the usual lines: Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /home/lisak/Desktop/freesurfer FSFAST_HOME /home/lisak/Desktop/freesurfer/fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /home/lisak/Desktop/freesurfer/subjects MNI_DIR /home/lisak/Desktop/freesurfer/mni FSL_DIR /home/lisak/Desktop/fsl The outputs of which freeview and which freeview.bin are, respectively: # 1. /home/lisak/Desktop/freesurfer/bin/freeview 2. /home/lisak/Desktop/freesurfer/bin/freeview.bin These are actual locations of the file, so all seems good until that point. I typed "freeview" again, after doing the "which freeview" commands, and I got the "freeview.bin: Command not found." again. Any further suggestions are appreciated! Thanks in advance, Darko On Tue, Apr 17, 2018 at 5:28 PM, Hoopes, Andrew <ahoo...@mgh.harvard.edu<mailto:ahoo...@mgh.harvard.edu>> wrote: Hi Darko, how are you sourcing freesurfer? And what is the output of running “which freeview” and “which freeview.bin”? best, Andrew From: <freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> on behalf of Darko Komnenić <komnen...@gmail.com<mailto:komnen...@gmail.com>> Reply-To: FS Help <freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>> Date: Tuesday, April 17, 2018 at 11:17 AM To: FS Help <freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>> Subject: [Freesurfer] unable to open freeview Dear experts, I encountered a problem when trying to open freeview. I am using FreeSurfer v.5.3.0-HCP, and after sourcing it, I tried typing simply freeview in the terminal, as described in this link: http://freesurfer.net/fswiki/FreeviewGuide/FreeviewGeneralUsage/FreeviewQuickStart but the feedback I get is: freeview.bin: Command not found. Am I missing something? When searching for freeview on my computer, "freesurfer" and "freesurfer.bin" appear in my bin subfolder, but for some reason they seem not to be recognized. Any help is appreciated! Best, Darko The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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