sorry, did not get it. Can you resend?
On 4/23/18 8:25 PM, Ryan Flores wrote: > External Email - Use Caution > > Hi Doug, > > I just wanted to follow up on this. Were you able to download the zip file ok? > > Best, > > Ryan > > On 4/18/18, 10:46 AM, "Ryan Flores" <rya...@stanford.edu> wrote: > > Yes, of course. Please see attached. > > Best, > > Ryan > > -- > Ryan Flores > Clinical Research Coordinator > On 4/18/18, 10:39 AM, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf > of Douglas N. Greve" <freesurfer-boun...@nmr.mgh.harvard.edu on behalf of > dgr...@mgh.harvard.edu> wrote: > > can you send me Hammers_mith_atlas_n30r83_SPM5.nii.gz ? > > > On 04/17/2018 07:55 PM, Ryan Flores wrote: > > > > Hi Doug, > > > > Thank you for your response. I attempted to run recon-all on the > > Hammersmith nifti file as suggested, but unfortunately it appears > to > > have run into some issues. I’ve attached the recon-all.log for > reference. > > > > Best, > > > > Ryan > > > > -- > > > > Ryan Flores > > > > Clinical Research Coordinator > > > > *From: *<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of > Douglas > > Greve <dgr...@mgh.harvard.edu> > > *Reply-To: *Freesurfer support list > <freesurfer@nmr.mgh.harvard.edu> > > *Date: *Tuesday, April 17, 2018 at 9:33 AM > > *To: *"freesurfer@nmr.mgh.harvard.edu" > <freesurfer@nmr.mgh.harvard.edu> > > *Subject: *Re: [Freesurfer] Recon-all w/ Hammersmith atlas > > > > Sorry, just seeing that you also want cortical summaries. Those > might > > be easier. You should run recon-all on the T1 template for the > > hammersmith. You can then create your own hammersmith annotation by > > mapping the atlas labels onto the surface (mri_vol2surf) and then > > mris_seg2annot. You can then use mris_apply_reg to map the > annotation > > to the surface of an individual (or fsaverage). > > > > On 4/16/18 3:14 PM, Ryan Flores wrote: > > > > Hi Freesurfer Developers, > > > > Our group is hoping to obtain the cortical thickness, surface > > area, and volume for various cortical regions (as well as some > > subcortical volumes); however, we would like these values to be > > outputted with respect to the regions delineated in the > > Hammersmith atlas. This atlas is available for free online > > > (http://brain-development.org/brain-atlases/adult-brain-maximum-probability-map-hammers-mith-atlas-n30r83-in-mni-space/) > > and I’ve included a screenshot to show you what files are > included > > in the download. Based on this information, what is the best > > and/or most straight forward to move forward? > > > > Thank you for your time. I look forward to hearing from you. > > > > 1. FreeSurfer version: > > freesurfer-i386-apple-darwin11.4.2-stable6-20170119 > > 2. Platform: macOS High Sierra (Version 10.13.1) > > > > Best, > > > > Ryan > > > > -- > > > > Ryan Flores > > > > Clinical Research Coordinator > > > > > > > > > > _______________________________________________ > > > > Freesurfer mailing list > > > > > Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> > > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to > whom it is > addressed. If you believe this e-mail was sent to you in error and > the e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to > you in error > but does not contain patient information, please contact the sender > and properly > dispose of the e-mail. > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
