Hi Dan which brainstem atlas do you mean?
cheers Bruce On Wed, 30 May 2018, djpet...@u.washington.edu wrote: > External Email - Use Caution > > Hi Freesurfer email list, > > I'm trying to get the midbrain mask from the brainstem segmentation > pipeline into standard space, for use in analyzing some data in other > modalities. I have labeled T1s in individual-space (it's a longitudinal > pipeline). Does the brainstem atlas already exist somewhere in > MNI-space as a mask? If so, where could I find it? I've found the ROI > mesh data, but I don't know how to convert that into a voxel mask. > > Thanks so much, > -Dan Peterson > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
