External Email - Use Caution /usr/local/freesurfer/stable5_3_0/bin/freesurfer
On Wed, Jun 6, 2018 at 12:23 AM, Douglas Greve <dgr...@mgh.harvard.edu> wrote: > what version of fs are you running? > > On 6/5/18 10:02 PM, Jiahe Zhang wrote: > > External Email - Use Caution > I tried both below and got the same error. > setenv TMPDIR $my_tmp_dir > setenv tmpdir $my_tmp_dir > > Is doesn't seems like selxavg3-sess reads this env variable. Or am I > missing something? > > On Mon, Jun 4, 2018 at 5:56 PM, Douglas N. Greve <dgr...@mgh.harvard.edu> > wrote: > >> >> set the TMPDIR env variable to point anywhere you want >> >> >> >> On 06/04/2018 02:57 PM, Jiahe Zhang wrote: >> > >> > External Email - Use Caution >> > >> > Dear Freesurfer experts, >> > >> > While running selxavg3-sess on a large functional scan (7 Tesla, 768 >> > time points), I got these errors >> > >> > gzip: stdout: No space left on device >> > ERROR: /tmp/tmp8187256.nii, read in 1669519272 voxels, expected >> 3257077248 >> > >> > It sounds like there wasn't enough space on /tmp for an intermediate >> > file to be written. Is there any way I can override the default so the >> > intermediate file gets written to a location that does have enough >> > storage space? >> > >> > Thanks, >> > Jiahe >> > >> > >> > >> > -- >> > Jiahe Zhang >> > Ph.D. Candidate >> > Department of Psychology >> > Northeastern University >> > 617-373-2649 >> > >> > >> > _______________________________________________ >> > Freesurfer mailing list >> > Freesurfer@nmr.mgh.harvard.edu >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> > > > > -- > Jiahe Zhang > Ph.D. Candidate > Department of Psychology > Northeastern University > 617-373-2649 > > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- Jiahe Zhang Ph.D. Candidate Department of Psychology Northeastern University 617-373-2649
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