External Email - Use Caution I tried that, but no luck. FS ran into issues with ?h.white.H and then ?h.w-g.pct.mgh (maybe more errors). Is there a way to use qcache in 4.5? Could I simply download and install v.4.5 ( https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/4.5.0/) and go from there? I couldn't find instructions for v.4.5, but would the syntax of 'recon-all -s $sub -qcache' work?
Thanks much! On Wed, Jun 13, 2018 at 11:20 AM Douglas N. Greve <[email protected]> wrote: > I have no idea how to make it work with data that old. You can "fool" it > by copying or soft linking lh.curv to lh.white.K. You can probably get > it to at least finish. > > > On 06/06/2018 03:41 PM, Jamie Hanson wrote: > > > > External Email - Use Caution > > > > > > Hello all, > > > > I was trying to run qcache on some previously processed Freesurfer > > data from a colleague, but ran into some issues with missing files and > > wondered how best to proceed. > > > > Details: > > -The data was processed with (Freesurfer) v4.5.0 and I would ideally > > like to not reprocess it with a newer version (to keep in concordance > > with past published work, and also it's a large number of subjects, > > n=800+). > > -The qcache flag was not used with the data previously (to my > > knowledge), so I was attempting to run this command: recon-all -s > > $subj -qcache > > -When I try that command, I get an error regarding a > > missing lh.white.K file. > > > > I've uploaded the log file here: > > https://www.dropbox.com/s/94mnsy7wrps5ce2/recon-all.log?dl=0 > > > > I wondered if it was possible to complete qcache with the data as is? > > I searched on the list previously and saw one or two other folks had > > run into this issues; I, however, didn't see a final solution to > > things. Any thoughts or suggestions are greatly appreciated! Thanks much! > > > > Best, > > Jamie. > > > > -- > > Jamie Hanson > > Assistant Professor, Psychology > > Research Scientist, Learning Research and Development Center > > University of Pittsburgh > > Personal website: jamiehanson.org <http://jamiehanson.org> > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > [email protected] > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
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