Can you replicate the error outside of dt_recon? If so, then you should make a posting to the FSL group.
On 06/28/2018 02:03 AM, Куликова Софья Петровна wrote: > > External Email - Use Caution > > Hello FreeSurfer Developers, > > I was trying to run dt_recon (on centos7 system) but have got an error at the > eddy_correct stage, saying there is no $FSLDIR/bin/imglob file. > Indeed, it is not there. However, I gave installed FSL according to their > tutorial without any errors and have no problem with running dt_recon on > another machine. > Could you kindly tell me how can I deal with this issue? > > Best regards, > Sofya Kulikova > PhD Neuroscience, HSE-Perm > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
