External Email - Use Caution I am a bit puzzled. I am running freesurfer 5.3 HCP on ubuntu 14.04. I am getting an error, see below I am using the command
recon-all -s BOLD-52_v1 -mprage -autorecon2 This has happened before. What did I do wrong. #@# ASeg Stats Fri Jul 13 12:55:02 CDT 2018 > > INFO: mri_segstats will not calculate Supratentorial > due to missing ribbon.mgz file > /data/nil-bluearc/ances/Aaron/FreeSurfers/BOLD-52_v1 > > mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz > --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 > --excl-ctxgmwm --subcortgray --in mri/norm.mgz --in-intensity-name norm > --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray > --euler --ctab /data/ances/FreeSurfer/freesurfer_5_3_HCP//ASegStatsLUT.txt > --subject BOLD-52_v1 > > > $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ > cwd > cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv > mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg > --excludeid 0 --excl-ctxgmwm --subcortgray --in mri/norm.mgz > --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol > --surf-ctx-vol --totalgray --euler --ctab > /data/ances/FreeSurfer/freesurfer_5_3_HCP//ASegStatsLUT.txt --subject > BOLD-52_v1 > sysname Linux > hostname brahms > machine x86_64 > user tanenbauma > UseRobust 0 > atlas_icv (eTIV) = 1714974 mm^3 (det: 1.135939 ) > mghRead(/data/nil-bluearc/ances/Aaron/FreeSurfers/BOLD-52_v1/mri/ribbon.mgz, > -1): could not open file > Computing euler number > orig.nofix lheno = -70, rheno = -38 > orig.nofix lhholes = 36, rhholes = 20 > Loading mri/aseg.mgz > Getting Brain Volume Statistics > Linux brahms 3.19.0-80-generic #88~14.04.1-Ubuntu SMP Fri Jan 13 14:54:07 > UTC 2017 x86_64 x86_64 x86_64 GNU/Linux > > recon-all -s BOLD-52_v1 exited with ERRORS at Fri Jul 13 12:55:11 CDT 2018 > > To report a problem, see > http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >
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