External Email - Use Caution Hi Anastasia,
Sure, I will try that. Thanks for the advice! Regards, Heidi On Fri, Sep 21, 2018 at 4:49 PM Yendiki, Anastasia <[email protected]> wrote: > You need to specify one more option, like -prep, etc. Please follow the > instructions on the tutorial and, if the problem persists, send the exact > command line that you ran and the full text of the output that you got. > > On Sep 21, 2018 2:42 AM, Heidi Emmanuel Foo <[email protected]> wrote: > > External Email - Use Caution > > Hi Anastasia, > > I think I ran trac-all -c config.txt. > > Regards, > Heidi > > On Thu, Sep 20, 2018 at 10:18 PM Yendiki, Anastasia < > [email protected]> wrote: > >> What is the trac-all command line that you run? >> ------------------------------ >> *From:* [email protected] < >> [email protected]> on behalf of Heidi Emmanuel Foo < >> [email protected]> >> *Sent:* Wednesday, September 19, 2018 11:06:09 PM >> *To:* Freesurfer support list >> *Subject:* Re: [Freesurfer] trac-all using nifti >> >> >> External Email - Use Caution >> >> Hi Anastasia, >> >> Nope, I don't actually get any output and/or log file. >> >> Regards, >> Heidi Foo >> >> >> >> On Tue, Sep 18, 2018 at 6:12 PM Yendiki, Anastasia < >> [email protected]> wrote: >> >> Hi Heidi - The config file that you sent looked fine to me. What is the >> trac-all command line that you run, and do you get any other output (like a >> trac-all.log file)? >> >> >> Best, >> >> a.y >> ------------------------------ >> *From:* [email protected] < >> [email protected]> on behalf of Heidi Emmanuel Foo < >> [email protected]> >> *Sent:* Monday, September 17, 2018 11:03:47 PM >> *To:* Freesurfer support list >> *Subject:* Re: [Freesurfer] trac-all using nifti >> >> >> External Email - Use Caution >> >> Hi Anastasia, >> >> It seems like I do. Could the problem be the config.txt? >> >> Thanks! >> >> Best Regards, >> Heidi Foo >> >> On Tue, Sep 18, 2018 at 12:47 AM Yendiki, Anastasia < >> [email protected]> wrote: >> >> Hi Heidi – Do you have write permission to create the output directory >> /data_int/heidi/forHeidi/Preprocessed? >> >> a.y >> >> From: <[email protected]> on behalf of Heidi >> Emmanuel Foo <[email protected]> >> Reply-To: Freesurfer support list <[email protected]> >> Date: Monday, September 17, 2018 at 12:55 AM >> To: Freesurfer support list <[email protected]> >> Subject: [Freesurfer] trac-all using nifti >> >> External Email - Use Caution >> >> Hi Anastasia, >> >> I am currently trying to run trac-all with my DWI data. I do not have the >> DICOM but only the Nifti files and I would like to use the same bval and >> bvec template for every subject. I created a configiration file as >> attached. However, I have the following error message: >> >> : Command not found. >> : Command not found. >> set: Variable name must begin with a letter. >> does not exist.DIR /data_int/heidi/forHeidi/Preprocessed >> >> It would be great if you could advise me on what to do. >> >> Thank you! >> >> Best Regards, >> Heidi Foo >> >> >> _______________________________________________ >> Freesurfer mailing list >> [email protected] >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> _______________________________________________ >> Freesurfer mailing list >> [email protected] >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> _______________________________________________ >> Freesurfer mailing list >> [email protected] >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
_______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
