Hi Boris
can you check to make sure that the input to the watershed looks ok? Also,
in general it is a lot easier for us to help if you send us the full
command line and screeen output and attach the recon-all.log
cheers
Bruce
On Thu, 11 Oct
2018, Boris Rauchmann wrote:
External Email - Use Caution
When I run recon-all i get the follwing error message:
mri_watershed Error:
GLOBAL region of the brain empty !
Linux 02f92500bcfb 4.15.0-36-generic #39~16.04.1-Ubuntu SMP Tue Sep 25
08:59:23 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s sub-XYZ exited with ERRORS at Thu Oct 11 15:10:22 UTC 2018
The .nii file looks fine. Can someone help me with this?
Best,
Boris
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
