External Email - Use Caution
I tried to confirm VBM analysis lots of platform i study in CAT, these days. Thanks for your reply. Greve, Douglas N.,Ph.D. <dgr...@mgh.harvard.edu> şunları yazdı (11 Eki 2018 18:47): > Which template surface? fsaverage? Are you using the 2mm MNI template > for VBM? If so, then you can use mri_label2vol specifying the desikan > annotation as the --annot and using > $FREESURFER_HOME/average/mni152.register.dat as the registration file. > >> On 10/11/2018 11:42 AM, ece ulug wrote: >> >> External Email - Use Caution >> >> Thanks for your response; >> >> >> I had already mapped normalized volume to template surface, so now I >> want to map the desikan atlas into the vbm volume. >> >> >> >> ------------------------------------------------------------------------ >> *Gönderen:* Greve, Douglas N.,Ph.D. <dgr...@mgh.harvard.edu> adına >> freesurfer-boun...@nmr.mgh.harvard.edu >> <freesurfer-boun...@nmr.mgh.harvard.edu> >> *Gönderildi:* 11 Ekim 2018 Perşembe 18:26 >> *Kime:* freesurfer@nmr.mgh.harvard.edu >> *Konu:* Re: [Freesurfer] Ynt: Desikan Atlas in MNI Space >> I'm not sure what you are trying to do. Do you want to map the vbm >> results to the surface and visualize the aparc (desikan atlas) or do you >> want to map the aparc into the vbm volume? >> >>> On 10/11/2018 09:59 AM, ece ulug wrote: >>> >>> External Email - Use Caution >>> >>> Hi, >>> >>> May be i cannot tell well, >>> >>> >>> I would like to use the Desikan atlas, which is a surface-based atlas >>> normally, as a volume template. >>> >>> Generally Desikan_surface.gii file is accesible. Can I visualize VBM >>> results correctly in for instances SPMglass brain using Desikan >> Atlas.nii? >>> >>> >>> Ece >>> >>> >>> ------------------------------------------------------------------------ >>> *Gönderen:* ece ulug <eceulu...@hotmail.com> >>> *Gönderildi:* 10 Ekim 2018 Çarşamba 12:27 >>> *Kime:* freesurfer@nmr.mgh.harvard.edu >>> *Konu:* Desikan Atlas in MNI Space >>>> /Dear All,/ >>>> / >>>> I am a master student in Turkey. For my thesis; I have to do exactly >>>> this; >>>> >>>> / >>>> /*Desikan atlas (which I have in the tailarach space) in the MNI >>>> space, as a file (Desikan_mni.nii). I am aware that transforming from >>>> one space to the other is not a very good idea but nevertheless I >>>> would like to test some computations. >>>> >>>> Anyone can attach/send a link/know of if exists such a file? the >>>> aparc+aseg.mgz in fsaverage is in mni305 space. will that work? >>>> */ >>>> /This is a mail dated 2014, freesurfer maillist, and I find this via >>>> internet./ >>>> /Desikan Atlas 'aparc+aseg.mgz' or .nii format where should I look for >>>> these file? / >>>> /And what is your opinion, is it good idea? / >>>> /(To transform Desikan atlas to mni space for visualization VBM >>>> results?) / >>>> /Thanks in advance/ >>>> /E. Ece Uluğ/ >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> Freesurfer Info Page - Harvard University >> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >> mail.nmr.mgh.harvard.edu >> To see the collection of prior postings to the list, visit the >> Freesurfer Archives.. A searchable archive which of messages PRIOR to >> March 2004 is at this site A searchable archive which includes >> messages AFTER March 2004 is at this site. Using Freesurfer >> >> >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
