External Email - Use Caution How would I do that? mris_convert doesn't seem to take .asc as an input?
________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Greve, Douglas N.,Ph.D. <dgr...@mgh.harvard.edu> Sent: 15 October 2018 16:25:51 To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Using a .asc file as overlay in freeview/tksurfer Not sure. Can you use mris_convert to convert the asc back to a curv file? On 10/15/2018 11:20 AM, Worker, Amanda wrote: > > External Email - Use Caution > > Hello, > > > I am trying to overlay a .asc file in either freeview or tksurfer, but > so far having no luck. > > > As practice and to determine the right format, I am simply using > lh.thickness, which I've converted to .asc using the following command: > > > % mris_convert -c lh.thickness lh.white lh.thickness.asc > > > I am trying to overlay this onto lh.pial for one subject, however I > cannot load the file and I get the following error message: > > > % mri_read(): couldn't determine type of file > /data/project/biobank/normative_modelling/DATA/03129b39-45a0-4491-9fdf-c7062a631d19/surf/lh.thickness.asc > surfer: couldn't load > /data/project/biobank/normative_modelling/DATA/03129b39-45a0-4491-9fdf-c7062a631d19/surf/lh.thickness.asc. > If you were trying to load a functional volume, make sure > you selected the right registration method, and if necessary, > that the registration file exists. > If you were trying to load a volume-encoded value file, > make sure it has the same number of values as this surface > does vertices (128970). > sclv_read_from_volume: error in FunD_New > > Interestingly, I can load the file as a curvature file, but then can't > play around with the threshold. > > > Do you have any idea what I'm doing wrong? Any help would be appreciated! > > > Thanks, > > > Amanda > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://emea01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer&data=01%7C01%7Camanda.worker%40kcl.ac.uk%7C3ac3c35e85fb46f47e2c08d632b28e63%7C8370cf1416f34c16b83c724071654356%7C0&sdata=p6poNQ0vBOYwWAjR4Ujk5lfKTtIcbEDR6icoWCJ2mz8%3D&reserved=0 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://emea01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer&data=01%7C01%7Camanda.worker%40kcl.ac.uk%7C3ac3c35e85fb46f47e2c08d632b28e63%7C8370cf1416f34c16b83c724071654356%7C0&sdata=p6poNQ0vBOYwWAjR4Ujk5lfKTtIcbEDR6icoWCJ2mz8%3D&reserved=0
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