External Email - Use Caution I tried. I cannot open them. They are not .mgz files, they are binary files. I will try though, and see what is happening.
Thank you, Rosalia El lun., 22 oct. 2018 21:49, Bruce Fischl <fis...@nmr.mgh.harvard.edu> escribió: > with freeview > On Mon, 22 Oct 2018, Rosalia Dacosta Aguayo wrote: > > > > > External Email - Use Caution > > > > Hi Bruce, > > > > I cannot examine those files with gedit. Could you tell me how to open > them? > > Thank you, > > Rosalia > > > > On Mon, Oct 22, 2018 at 9:35 PM Bruce Fischl <fis...@nmr.mgh.harvard.edu> > wrote: > > Hi Lisa > > > > no, likely you have to identify and correct the source of the > giant defect, > > typically be either fixing the skull stripping, or editing the > wm.mgz or > > adding control points > > > > cheers > > Bruce > > > > > > On Mon, 22 Oct 2018, Lisa Crystal Krishnamurthy wrote: > > > > > External Email - Use Caution > > > > > > Hi all, > > > > > > I have a stroke brain with a large lesion that runs into this > same problem. Is there a > > way to push the process along? No white matter segmentations are > created to try and edit > > the surface. > > > > > > Best, > > > -Lisa Krishnamurthy > > > > > > -----Original Message----- > > > From: freesurfer-boun...@nmr.mgh.harvard.edu > > [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of > Bruce Fischl > > > Sent: Monday, October 22, 2018 3:30 PM > > > To: Freesurfer support list > > > Subject: Re: [Freesurfer] Stuck in "CORRECTING DEFECT" > > > > > > Hi Rosaila > > > > > > usually when you have a defect that large (>30,000) vertices, > which is about 1/4 of > > the total surface more or less, something is dramatically wrong > and it is not worth > > waiting for it to finish (it might take days or weeks). Examine > the ?h.orig.nofix and > > ?h.inflated.nofix surfaces and see if there is some big problem > like skull or cerebellum > > attached to the surface. > > > > > > cheers > > > Bruce > > > > > > > > > On Mon, 22 Oct 2018, Rosalia Dacosta Aguayo wrote: > > > > > >> > > >> External Email - Use Caution > > >> > > >> Dear FreeSurfer team, > > >> > > >> I Have run -autorecon1 in my sample and the report.log was > "finished without errors" > > >> Now, running recon-all -all I have seen that a participant is > stuck in > > >> CORRECTING DEFECT 0 (vertices=31977, convex hull=5359, v0=0) > for more > > >> than an hour. I wonder if this is normal or if I should be > worried > > >> because recon-all takes 4.5 hours approximately for every > participant but for this > > one, it seems that is not moving from this step. > > >> > > >> Anyone could help me with this? > > >> > > >> Best regards, > > >> Rosaila > > >> > > >> > > >> > > >> > > > > > > _______________________________________________ > > > Freesurfer mailing list > > > Freesurfer@nmr.mgh.harvard.edu > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > >_______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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