I think there is no option to set custom color code for overlay from command-line. I’ll add that option and let you know when it’s ready.
Best, Ruopeng > On Nov 1, 2018, at 4:51 PM, Nillo, Ryan Michael R > <ryanmichael.ni...@ucsf.edu> wrote: > > External Email - Use Caution > Hi Freesurfer Users, > > I used linear regression to map regional beta values on the fsaverage > surface. I want to use a colormap that goes from blue to gray or gray to red > (no cyan and yellow). I've been using a custom colormap shown in > example.tiff. I've been making this by going into freeview and adjusting the > parameters from the GUI. Is there a way to load this and create a snapshot > from the command line? I know you can adjust certain parameters like overlay > threshold and change the colormap, but I don't see an option for "custom". > The end goal is to make multiple regression models and automate the > screenshot process. > > Best, > > Ryan M Nillo > Staff Research Associate I > UCSF Department of Radiology and Biomedical Imaging > <example.tiff>_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
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