that certainly looks like something is running out of ram. Can you run
the command that failed directly on the command line and see if it works?
Was anything else running on the machine at the time? We do report total
and free memory at the start of the recon in the recon-all.log file
cheers
Bruce
On Tue,
6 Nov 2018, 1013364183 wrote:
External Email - Use Caution
Dear FS,
When we run ??recon-all?? with a 5GB high-resolution image, core dumped appears
when the mri_convert
command is executed. The specific errors are as follows:
/opt/el7/pkgs/freesurfer/freesurfer_6.0/bin/mri_convert: line 3: 29235 Aborted
(core dumped)
mri_convert.bin "$@"
ERROR: converting to minc
We want to know if our high resolution image is too large for freesurfer to
handle, or our computer
memory (64GB running memory) is limited.
Thanks a lot in advance!
yours sincerely,
yu junjie
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