External Email - Use Caution Hi Diamond!
I think I did it. Thank you very much!! -------- freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /usr/local/freesurfer FSFAST_HOME /usr/local/freesurfer/fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /usr/local/freesurfer/subjects MNI_DIR /usr/local/freesurfer/mni FSL_DIR /usr/share/fsl/5.0 rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop $ cd /home/rosalia/Desktop/transferrosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop/transfer $ ftp surfer.nmr.mgh.harvard.edu Connected to surfer.nmr.mgh.harvard.edu. 220-This is the Martinos Center Anonymous FTP service. Use of this site 220-shows implicit consent to our Acceptable Use Policy outlined at 220-http://www.nmr.mgh.harvard.edu/martinos/userInfo/computer/nmr-aup.php 220- 220-OPERATIONAL NOTE: If, when doing a GET or PUT, you encounter either 220- 220-229 Entering Extended Passive Mode 220- 220- and nothing happens OR 220- 220-229 Entering Extended Passive Mode 220-500 Bad EPRT protocol. 220- 220- try issuing the EPSV command prior to GET or PUT. 220- 220 Name (surfer.nmr.mgh.harvard.edu:rosalia): anonymous 331 Please specify the password. Password: 230 Login successful. Remote system type is UNIX. Using binary mode to transfer files. ftp> cd transfer/incoming 250 Directory successfully changed. ftp> put two_different_problems.tar.gz local: two_different_problems.tar.gz remote: two_different_problems.tar.gz 200 PORT command successful. Consider using PASV. 150 Ok to send data. On Mon, Dec 3, 2018 at 6:46 PM Diamond, Bram Ryder < brdiam...@mgh.harvard.edu> wrote: > Hi Rosalia, > > > Within the FTP interface, you need to write > "put two_different_problems.txt". It seems like you only wrote the file > name. Also, the example we provide is "filename.txt", make sure you > write your file name - only include ".txt" if your file has that extension. > > > Let me know if you have any additional questions. > > > Best, > > Bram > > > *Bram R. Diamond, BSc* > Research Technician II > Laboratory for Computational Neuroimaging > Martinos Center for Biomedical Imaging > Massachusetts General Hospital > 149 13th Street > Charlestown, MA 02129 > (p): 617-726-6598 > > ------------------------------ > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Rosalia Dacosta > Aguayo <rdacos...@gmail.com> > *Sent:* Monday, December 3, 2018 10:54:53 AM > *To:* Freesurfer support list > *Subject:* Re: [Freesurfer] When no control points are needed... > > > External Email - Use Caution > > Hi Bruce, > > This is the directory where I have the data: > > /home/rosalia/Desktop/transfer > > And I changed the directory before doing FTP...and then asked again for > the directory and I wrote the same directory and then when asked me for > the name of the file, I provided the name of the file.txt > > Thank you, > Rosalia > > On Mon, Dec 3, 2018 at 4:51 PM Bruce Fischl <fis...@nmr.mgh.harvard.edu> > wrote: > > is that the right directory/path on your end? > > On Mon, 3 Dec 2018, Rosalia Dacosta > Aguayo wrote: > > > > > External Email - Use Caution > > > > Hi Bruce, > > > > Thank you for your reply. > > I am having problems when trying to upload the two files with FTP, it > seems > > the problem is with the directory. > > rosalia@rosalia-Lenovo-Y520-15IKBN ~/Desktop $ ftp > > surfer.nmr.mgh.harvard.edu > > Connected to surfer.nmr.mgh.harvard.edu. > > 220-This is the Martinos Center Anonymous FTP service. Use of this > > site > > 220-shows implicit consent to our Acceptable Use Policy outlined > > at > > 220- > http://www.nmr.mgh.harvard.edu/martinos/userInfo/computer/nmr-aup.php > ?? ? > > 220- > > 220-OPERATIONAL NOTE: If, when doing a GET or PUT, you encounter either > > 220- > > 220-229 Entering Extended Passive Mode > > 220- > > 220- and nothing happens OR > > 220- > > 220-229 Entering Extended Passive Mode > > 220-500 Bad EPRT protocol. > > 220- > > 220- try issuing the EPSV command prior to GET or PUT. > > 220- > > 220 > > Name (surfer.nmr.mgh.harvard.edu:rosalia): anonymous > > 331 Please specify the password. > > Password: > > 230 Login successful. > > Remote system type is UNIX. > > Using binary mode to transfer files. > > ftp> cd home/rosalia/Desktop/transfer > > 550 Failed to change directory. > > ftp> > > > > > > On Mon, Dec 3, 2018 at 3:50 PM Bruce Fischl <fis...@nmr.mgh.harvard.edu> > > wrote: > > Hi Rosalia > > > > you always have to run autorecon3 every time autorecon2 is run > > > > cheers > > Bruce > > > > > > On Mon, 3 Dec 2018, Rosalia > > Dacosta Aguayo wrote: > > > > > > > > External Email - Use Caution > > > > > > Dear Bruce and Bram, > > > > > > After improving the pial surface for my participants, I have > > seen that some of them do not need > > > control points. My question is: for those ones, should I run > > -autorecon2 and -autorecon3 or only > > > -autorecon3. > > > > > > Hi Bruce and Bram, I will try to upload two problematic files. > > When I told you that I have been > > > editing all my participants I was referring that some of them > > need more editing than others, and the > > > ones that needed the less I just tried to improve the pial > > surface not too much, but now the results > > > are better than before. > > > > > > Thank you in advance for your help.Yours sincerely, > > > Rosalia > > > > > >_______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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