Use mri_segstats. Run with --help to get more info On 12/03/2018 06:12 AM, Anik Dar wrote: > > External Email - Use Caution > > Dear All, > > I have segmented the midbrain of each subjects into different > subregions (peduncle, substantia nigra, red nucleus etc) using an > atlas. I am trying to extract the volume of each region (the regions > are labeled 101, 102, 103 etc) and also trying to extract the mean > intensity from MPRAGE from each of these regions. > > Is there a way to do this in freesurfer tools ? I realize that there > is no color lut / index file associated with this atlas in freesurfer. > > Please let me know. > > Thank you, > > Ani > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
