External Email - Use Caution Dear Dr. Greve,
I have 45 subjects as input. SLURM is also a parallel processing pipeline similar to PBS, Grid Engine, or Condor: https://en.wikipedia.org/wiki/Slurm_Workload_Manager I am not sure how can I speed up the mri_glmfit-sim processing. Thanks ! On Thu, Dec 6, 2018 at 11:07 AM Greve, Douglas N.,Ph.D. < dgr...@mgh.harvard.edu> wrote: > I don't know what Slurm is, so I guess the answer is no. If you have > multiple processors on your machine, you can use the --bg option. In > general, I have not seen it take that long to run. How many input > subjects do you have? > > On 12/06/2018 12:55 PM, Sahil Bajaj wrote: > > > > External Email - Use Caution > > > > Hello experts, > > > > I was trying to run mri_glmfit-sim --glmdir XY.glmdir --perm 1000 1.3 > > abs --cwp 0.05 --2spaces command, but its taking forever even if I > > reduce # of permutations from 1000 to 10. > > > > I was just wondering if there’s a version of FreeSurfer for Slurm > > parallel processing clusters. > > > > Thanks ! > > Sahil > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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