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Can? you send the full terminal output?
On 12/05/2018 01:25 AM, Sara Jafakesh wrote:
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> ????????External Email - Use Caution
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> Dear freesurfer experts,
> I want to calculate corrolation between two seeds with
> freesurfer-linux-centos6_x86_64_stable_pub-v6 .after using
> fcseed-config and fseed-sess , I used fcseedcor. the command
> that I trying to run is as follow:
> fcseedcor -s subj1 -fsd rest -seed lh-seed2.dat -seed
> lh-seed3.dat -xreg wm.dat 5 -xreg vcsf.dat 5 -xreg mcprextreg
> 6 -hpf .001 -lpf .1 -nskip 6 -o seedcor2.dat
> but the output of fcseedcor is not? .dat file ( the
> connectivity matrix for my result 2*2 matrix)? as it has been
> explained in the fcssedcor help. the output is just the .log
> file named? seedcor2.dat.log. although it has been done
> without error.
> I really dont know what is the problem.
> I would be grateful if you could help me.
> best regards,
> sara
thank you for your reply
my full terminal output is:
[user@localhost subjects]$ fcseedcor -s subj1 -fsd rest -seed lh-seed2.dat
-seed lh-seed3.dat -xreg wm.dat 5 -xreg vcsf.dat 5 -xreg mcprextreg 6 -hpf
.001 -lpf .1 -nskip 6 -o seedcor2.dat
Sat Dec 1 18:05:11 IRST 2018
setenv SUBJECTS_DIR /home/user/freesurfer/subjects
cd /home/user/freesurfer/subjects
/home/user/freesurfer/fsfast/bin/fcseedcor -s subj1 -fsd rest -seed
lh-seed2.dat -seed lh-seed3.dat -xreg wm.dat 5 -xreg vcsf.dat 5 -xreg
mcprextreg 6 -hpf .001 -lpf .1 -nskip 6 -o seedcor2.dat
freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
$Id: fcseedcor,v 1.3 2015/12/10 22:51:29 zkaufman Exp $
Linux localhost.localdomain 2.6.32-642.el6.x86_64 #1 SMP Tue May 10 17:27:01
UTC 2016 x86_64 x86_64 x86_64 GNU/Linux
------- matlab output --------------------
matlab: Command not found.
Started at Sat Dec 1 18:05:11 IRST 2018
Ended at Sat Dec 1 18:05:12 IRST 2018
Fcseedcor-Run-Time-Sec 1
Fcseedcor-Run-Time-Hours 0.00
fcseedcor Done
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