Yes, include the -T2pial flag
On 12/11/2018 12:06 PM, Maksimovskiy, Arkadiy wrote:
>
> Dear Experts,
>
>
> I am planning to run "recon" using T1 and T2 images, and was wondering
> if you wouldn't mind confirming whether this is the right command with
> recon:
>
>
> recon-all -s ${subject} -i T1.nii -T2 T2.nii -all
>
>
> I have seen a slightly different variation in the mailing archives,
> but this was years ago, and I believe that mine is consistent with the
> Wiki. Additionally, should the -T2pial flag be included?
>
>
> Thank you for your help,
>
> Arkadiy
>
>
> --
> Arkadiy L. Maksimovskiy, Ph.D.
> Postdoctoral Research Fellow
> McLean Imaging Center, McLean Hospital
> Department of Psychiatry, Harvard Medical School
>
>
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