Hi John
sorry, not really. If you constrain the topology of the cerebellum you will
probably loose a lot of it since the folia are so small. You can try using
Florent Segonne's old code (mri_topologycorrection), which will generate a
discrete segmentation that has the correct topology (hopefully!), but I
don't believe that guarantees that covering the surface of it will also be
topologically correct.
cheers
Bruce
On Tue, 22 Jan 2019, john Anderson wrote:
External Email - Use Caution
Hi Dr Bruce,
I applied your recommendations and I was able to create surfaces to the
cerebellum and brain stem using the command mri_tesselate. I am not happy with
the topology though... There are holes and some defects. Would you recommend
any commands to improve the topology of these structures?
Your guidance is appreciated,
John
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‐‐‐‐‐‐‐ Original Message ‐‐‐‐‐‐‐
On Thursday, January 10, 2019 1:37 PM, john Anderson
<john.ande...@protonmail.com> wrote:
Ah! great!! thank you so much for the great help!!
Have a good day,
John
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‐‐‐‐‐‐‐ Original Message ‐‐‐‐‐‐‐
On Thursday, January 10, 2019 1:03 PM, Bruce Fischl fis...@nmr.mgh.harvard.edu
wrote:
Hi John
we distribute an aseg.mgs with fsaverage I believe. You can just
tesselate that.
cheers
Bruce
On Thu, 10 Jan 2019, john Anderson wrote:
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Hi Dr Bruce, I highly appreciate your guidance.
I would like to load the cerebellum and brain stem structures as an average
structure similar to
"fsaverage" , I usually use the command
tksurferfv fsaverage lh pial -overlay <image>
mri_tessellate or mri_mc would create a surface for every subject, how can I
create the average of the
surfaces of those structures similar to "fsaverage"?
Thanks again for any highlights
John
Hi John
you could use mri_tessellate or mri_mc to create a surface for those
structures, then smooth them with
mris_smooth and load them into freeview.
Shouldn't be too hard.
cheers
Bruce
On Thu, 10 Jan 2019, john Anderson
wrote:
‐‐‐‐‐‐‐ Original Message ‐‐‐‐‐‐‐
On Thursday, January 10, 2019 7:40 AM, john Anderson
john.ande...@protonmail.com wrote:
Dear FS experts,
For visualization purposes, is there any way to show the cerebellum and brain
stem regions
(similar to the attached figure), this figure was published used CONN toolbox
but I am not sure
how they were able to map functional data in brain surface and show the
cerebellum and brain
stem with fsaverage.
I appreciate any suggestion
Jon
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